PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM75774.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

CO-like

Protein Properties

Length: 430aa MW: 47841.3 Da PI: 6.0114

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM75774.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	29.4	1.7e-09	16	59	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + +k+++++C ++ +lC++C + H+ H++v OWM75774.1 16 ARACDSCIQKRARWYCAADDAFLCQSCDASVHSAnplarrHERV 59 578*****************************657888888876 PP
2	CCT	69.1	1.1e-23	374	416	1	43
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+ OWM75774.1 374 REAKVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKR 416 9****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence
MISHKNAASA VSGKTARACD SCIQKRARWY CAADDAFLCQ SCDASVHSAN PLARRHERVR 60 LKTASLRNLN EFPKENKDSA PSWHRGFTKK ARTPRHGKAV LSVRNPIPLV PEFGGDETSN 120 EENEEQLLYR VPAYDPFASE LCSSKETEIV APFDFNETKG VPVRYGTGAE RMHGFLPSDT 180 DLAEFAADVE SLLGKGLENE SFGMEGLGLM DCDKERENSQ DCSFGSEKLV KTEDEGVLAP 240 DVGQDNQVDA EIDISKETFE LNFDDYCSPT TCGEEEDEKV AEPEAHANVE NPVKDAAKKR 300 RKIFLKLDYE SVLESWSSQG SPWTSGDRPD LNSDDYWPDC LGLYGGEVHN HHGELVGGGG 360 GYGGHMGVGS TAGREAKVSR YREKRRTRLF SKKIRYEVRK LNAEKRPRMK GRFVKRVPFT 420 GPTSFPLLSK

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence

MISHKNAASA VSGKTARACD SCIQKRARWY CAADDAFLCQ SCDASVHSAN PLARRHERVR  60
LKTASLRNLN EFPKENKDSA PSWHRGFTKK ARTPRHGKAV LSVRNPIPLV PEFGGDETSN  120
EENEEQLLYR VPAYDPFASE LCSSKETEIV APFDFNETKG VPVRYGTGAE RMHGFLPSDT  180
DLAEFAADVE SLLGKGLENE SFGMEGLGLM DCDKERENSQ DCSFGSEKLV KTEDEGVLAP  240
DVGQDNQVDA EIDISKETFE LNFDDYCSPT TCGEEEDEKV AEPEAHANVE NPVKDAAKKR  300
RKIFLKLDYE SVLESWSSQG SPWTSGDRPD LNSDDYWPDC LGLYGGEVHN HHGELVGGGG  360
GYGGHMGVGS TAGREAKVSR YREKRRTRLF SKKIRYEVRK LNAEKRPRMK GRFVKRVPFT  420
GPTSFPLLSK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	298	302	KKRRK
2	385	401	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	1e-95	CO-like family protein