PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OWM75772.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
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Family | LBD | ||||||||
Protein Properties | Length: 256aa MW: 28217.1 Da PI: 8.8093 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 90.8 | 1.6e-28 | 2 | 101 | 1 | 95 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C+vlr++C++dC+++p++ p++q++++ +++k++G++ +++l++a +e+ r+++++sl+yeA+ r+ +P+yG+vg+++++++ ++++++ OWM75772.1 2 SCNGCRVLRKGCSDDCAIRPCLqwissPDSQANATMFLAKFYGRAGLVNLISAGSEHVRPAIFRSLLYEACGRIINPIYGSVGLFWSGNWSQCHSAVNS 100 6******************************************************************************************99988766 PP DUF260 95 a 95 + OWM75772.1 101 V 101 5 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence |
MSCNGCRVLR KGCSDDCAIR PCLQWISSPD SQANATMFLA KFYGRAGLVN LISAGSEHVR 60 PAIFRSLLYE ACGRIINPIY GSVGLFWSGN WSQCHSAVNS VLKGSTHFMR HVTLINSAQP 120 FPALKTYDIR HNHRATSPAT SYDIHKVRTS RPRFKQSILR PTESKPASSQ WLYDPTSCDS 180 IQASRLGPKR DSLEGIDSLL FAETVEAFLV SRSGPDRVLR FDGPKSSTEN HVVKLDLTLG 240 IGAHADACMA ELADHH |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 2e-67 | LBD family protein |