PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM75253.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

bHLH

Protein Properties

Length: 501aa MW: 54360.7 Da PI: 6.9569

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM75253.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.7	4.3e-13	356	402	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI++Lq OWM75253.1 356 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYINDLQ 402 799*********************66......****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 501 aa Download sequence
MGGKLWSNDD ERAMVESVLG GQACEAVMSS AALKGDLVLP LGDLDVRSGL TKLFEGSDWN 60 YAIFWRVVGL KSGGTALIWG DGHYVRDLKP GVAEDGGSGG GKPDGVQKKD EMNKLVLQKL 120 RGIFGRSEDN NSSATGSNGV SDLEMFYLTS MYFSFRSDST DGPMSAHKGS RLIWSSNGSS 180 SLDQYKSRSL LASSAGLKTV AFVAVKGGVV ELGSVQMIPE KQETAELITK TFGAAALVAA 240 KSVPKIFGQE LGLGSMKSQS ISISFSPKVE DDSGFVSESF EALPISSSQV HGSVFNGCPT 300 DGEGKLFPQI PVGNFSPHAR ISNLEQQRDE MSLTMDERKP RKRGRKPANG REEPLNHVEA 360 ERQRREKLNQ RFYALRAVVP NISKMDKASL LGDAITYIND LQMKIRVLET EKSLAVNSKR 420 LMVPDFDVQP RHEDAVVTVS CPLEAHPASE VIKALREQQV TPECDVSLMM DKREVVHTFS 480 VQTQAGAAEQ LKQKLVAALA K

Sequence ? help Back to Top

Protein Sequence Length: 501 aa Download sequence

MGGKLWSNDD ERAMVESVLG GQACEAVMSS AALKGDLVLP LGDLDVRSGL TKLFEGSDWN  60
YAIFWRVVGL KSGGTALIWG DGHYVRDLKP GVAEDGGSGG GKPDGVQKKD EMNKLVLQKL  120
RGIFGRSEDN NSSATGSNGV SDLEMFYLTS MYFSFRSDST DGPMSAHKGS RLIWSSNGSS  180
SLDQYKSRSL LASSAGLKTV AFVAVKGGVV ELGSVQMIPE KQETAELITK TFGAAALVAA  240
KSVPKIFGQE LGLGSMKSQS ISISFSPKVE DDSGFVSESF EALPISSSQV HGSVFNGCPT  300
DGEGKLFPQI PVGNFSPHAR ISNLEQQRDE MSLTMDERKP RKRGRKPANG REEPLNHVEA  360
ERQRREKLNQ RFYALRAVVP NISKMDKASL LGDAITYIND LQMKIRVLET EKSLAVNSKR  420
LMVPDFDVQP RHEDAVVTVS CPLEAHPASE VIKALREQQV TPECDVSLMM DKREVVHTFS  480
VQTQAGAAEQ LKQKLVAALA K

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	338	346	RKPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16430.1	1e-141	bHLH family protein