PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM74964.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

CO-like

Protein Properties

Length: 437aa MW: 47180.9 Da PI: 5.7575

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM74964.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	22.7	2.1e-07	2	42	3	39
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg....Htv 39 e+ C+ ++ ++ +C++++ lC C ++H+ H++ OWM74964.1 2 EPSCDFCNAVRAVVYCKSDSARLCLRCDGYIHSAnslaHRH 42 689****99*******************657888553 PP
2	CCT	62.7	1.1e-21	366	409	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R++a++RY+eK+ktR F K+irY+sRKa+A++R+RvKGrFvk+ OWM74964.1 366 RDKAKMRYNEKKKTRMFGKQIRYASRKARADTRKRVKGRFVKAG 409 899**************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence
MEPSCDFCNA VRAVVYCKSD SARLCLRCDG YIHSANSLAH RHSRSLLCDK CSCQPAIIRC 60 SDEKLSLCQG CEWNGQGCSG PGHSQQALNC YSGCPSMAEF SSIWASILDP PPSSGEFDNG 120 WGSYNGLSCN LERKGSEVCY GNTGPNKLTE LESWLGLPSS YTTHPNQMQF CRDQAPSMSP 180 DLNPPKVLPG CSGFKNLGVQ DSGADLCQNL NMDGLTNLGN GNDIIDCKTD QAQYQFEDGD 240 MECLLMGKNL PAPETNGPIE NIEASESGQP ECVAFQPSQL GNLILGMQYV KGGGGGGTNS 300 CMLMNPPNCN RNIGLGFPAS SKSLSLSNIT GESSASDYQD CGLSPMLLSV ESPWDPNLEG 360 SSPQARDKAK MRYNEKKKTR MFGKQIRYAS RKARADTRKR VKGRFVKAGE ANDYNPTGAT 420 MSFETEKATF PCKTSSC

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence

MEPSCDFCNA VRAVVYCKSD SARLCLRCDG YIHSANSLAH RHSRSLLCDK CSCQPAIIRC  60
SDEKLSLCQG CEWNGQGCSG PGHSQQALNC YSGCPSMAEF SSIWASILDP PPSSGEFDNG  120
WGSYNGLSCN LERKGSEVCY GNTGPNKLTE LESWLGLPSS YTTHPNQMQF CRDQAPSMSP  180
DLNPPKVLPG CSGFKNLGVQ DSGADLCQNL NMDGLTNLGN GNDIIDCKTD QAQYQFEDGD  240
MECLLMGKNL PAPETNGPIE NIEASESGQP ECVAFQPSQL GNLILGMQYV KGGGGGGTNS  300
CMLMNPPNCN RNIGLGFPAS SKSLSLSNIT GESSASDYQD CGLSPMLLSV ESPWDPNLEG  360
SSPQARDKAK MRYNEKKKTR MFGKQIRYAS RKARADTRKR VKGRFVKAGE ANDYNPTGAT  420
MSFETEKATF PCKTSSC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21880.1	3e-92	CO-like family protein