PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM74696.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

Trihelix

Protein Properties

Length: 386aa MW: 41652.3 Da PI: 8.3093

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM74696.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	54.6	2.8e-17	28	119	2	74
trihelix 2 WtkqevlaLiearremeerlrrgk...................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtse 74 Wt e+++Liea++ ++er r + + +p+W++v ++++++ + rs++qC++kw+nl ++ykk+++ e++r+s+ OWM74696.1 28 WTVLETMVLIEAKKMDDERRMRIRatgaggepgssgsgvtanrSSEPRWKWVEDYCWRKECFRSQNQCNDKWDNLMRDYKKVRDYERRRRST 119 ***********977777776333456777788888888888******************************************99654 PP

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence
MVMADQGGGG NSMAASVAVM RDYRKGNWTV LETMVLIEAK KMDDERRMRI RATGAGGEPG 60 SSGSGVTANR SSEPRWKWVE DYCWRKECFR SQNQCNDKWD NLMRDYKKVR DYERRRRSTA 120 GDDSASEDLS YWKMEKAERK DRNLPTNLLP QIYEALVDVV ERKLGGGSSG GGPSVALALP 180 GSGSTAASSH HQPPGASGAG MSLQPVASSL LPPIPLPPQY ASAPVLLALP PQTSPTTEAP 240 QRPQPFPSPI ERSDTSDSET NEHSHSSPAK RRRRIARAVG GPEEEGKRAA AAASSGGTSS 300 YEAVGTAISR SASIIAEALQ ACDEREERRH RDLLGIQERR LKLEESNAET NKQGINGLVD 360 AINKLADSIH ALAASSSSKN QSSAPE

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence

MVMADQGGGG NSMAASVAVM RDYRKGNWTV LETMVLIEAK KMDDERRMRI RATGAGGEPG  60
SSGSGVTANR SSEPRWKWVE DYCWRKECFR SQNQCNDKWD NLMRDYKKVR DYERRRRSTA  120
GDDSASEDLS YWKMEKAERK DRNLPTNLLP QIYEALVDVV ERKLGGGSSG GGPSVALALP  180
GSGSTAASSH HQPPGASGAG MSLQPVASSL LPPIPLPPQY ASAPVLLALP PQTSPTTEAP  240
QRPQPFPSPI ERSDTSDSET NEHSHSSPAK RRRRIARAVG GPEEEGKRAA AAASSGGTSS  300
YEAVGTAISR SASIIAEALQ ACDEREERRH RDLLGIQERR LKLEESNAET NKQGINGLVD  360
AINKLADSIH ALAASSSSKN QSSAPE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	270	275	KRRRRI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31310.1	6e-56	Trihelix family protein