PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM74102.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

C3H

Protein Properties

Length: 424aa MW: 45199.7 Da PI: 7.4656

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM74102.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.4	2e-12	43	68	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++rtG+C yG+rC+F+H++ OWM74102.1 43 DEADCIYYLRTGFCGYGARCRFNHPR 68 6799********************96 PP
2	zf-CCCH	38.1	2.6e-12	90	114	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C++f+rtG Ck+G++Ck++H++ OWM74102.1 90 QPICQYFMRTGMCKFGASCKYHHPR 114 799********************96 PP
3	zf-CCCH	35.1	2.2e-11	135	160	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++ +tG Ck+G++CkF+H++ OWM74102.1 135 GEKECSYYVKTGNCKFGNTCKFHHPQ 160 7899********************97 PP
4	zf-CCCH	35.9	1.3e-11	296	322	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++++tG Ck+G++C+++H+p OWM74102.1 296 PGQPDCQHYLKTGDCKFGSSCRYHHPP 322 5789*********************97 PP
5	zf-CCCH	32.7	1.3e-10	345	368	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C+++a++G+Ck+G++CkF H++ OWM74102.1 345 AQCSHYAQYGECKFGPSCKFDHSM 368 67********************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence
MELHGGSNEG LVSQPETGLE EPLWQMGLDG GGGGGESYPE RPDEADCIYY LRTGFCGYGA 60 RCRFNHPRDR SMVIGAARAG AGDFPERIGQ PICQYFMRTG MCKFGASCKY HHPRQGTGST 120 SPVPLNYHGY PLRPGEKECS YYVKTGNCKF GNTCKFHHPQ PAGLQVPVPP GPPTVQMGPL 180 PTPVPTPVLY PSMQSPSGPG AVVARTSLLP QYVPGPYGHM LLSPSMVPFH GWSPYQVPMS 240 PVPSSAAQPT SGCSPLYGIT QLSPSAPAYT GPFQPSLSSI TPLINTQKEQ SLPERPGQPD 300 CQHYLKTGDC KFGSSCRYHH PPDLMVPNTN IILSPTGLPF RPGAAQCSHY AQYGECKFGP 360 SCKFDHSMGP QSHSPSASSL AVSYSSGSSS GTLAPSSSSP ELRDEPSSAQ SISQERNQSS 420 EASA

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence

MELHGGSNEG LVSQPETGLE EPLWQMGLDG GGGGGESYPE RPDEADCIYY LRTGFCGYGA  60
RCRFNHPRDR SMVIGAARAG AGDFPERIGQ PICQYFMRTG MCKFGASCKY HHPRQGTGST  120
SPVPLNYHGY PLRPGEKECS YYVKTGNCKF GNTCKFHHPQ PAGLQVPVPP GPPTVQMGPL  180
PTPVPTPVLY PSMQSPSGPG AVVARTSLLP QYVPGPYGHM LLSPSMVPFH GWSPYQVPMS  240
PVPSSAAQPT SGCSPLYGIT QLSPSAPAYT GPFQPSLSSI TPLINTQKEQ SLPERPGQPD  300
CQHYLKTGDC KFGSSCRYHH PPDLMVPNTN IILSPTGLPF RPGAAQCSHY AQYGECKFGP  360
SCKFDHSMGP QSHSPSASSL AVSYSSGSSS GTLAPSSSSP ELRDEPSSAQ SISQERNQSS  420
EASA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18550.1	1e-131	C3H family protein