PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM73153.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MYB

Protein Properties

Length: 395aa MW: 43542.8 Da PI: 9.977

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM73153.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.6	1.1e-16	129	174	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+q+G+ +W+ Ia+++ gR++k+c++rw++ OWM73153.1 129 RGHWRPAEDAKLKELVAQFGPQNWNVIAEHLE-GRSGKSCRLRWFNQ 174 899***************************.*********996 PP
2	Myb_DNA-binding	54.3	3.1e-17	181	224	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r+++++eE+e+l+ a++++G++ W+ Iar ++ gRt++ +k++w+ OWM73153.1 181 RKAFSEEEEERLLTAHRMYGSK-WAMIARLFP-GRTDNAVKNHWHV 224 789*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence
MSKTEHLKTR LGRFTGFQDL NSLPSSPYNP PQLSLYGAFP GAASLGERKP EMTEAGFQFL 60 APAMGQTDKA WAFEPLKSRG GVKTQHDVES DGHGGKADKT TVRPGLDEED EVNRCSNVGK 120 GGHVKLCARG HWRPAEDAKL KELVAQFGPQ NWNVIAEHLE GRSGKSCRLR WFNQLDPRIN 180 RKAFSEEEEE RLLTAHRMYG SKWAMIARLF PGRTDNAVKN HWHVIMARKQ REQSNVYRKR 240 KLLPPHMVFD VKPPNRNTSS TESTISSNRD ESASTCTKLS LSASSARPVP VLFGRSGPVQ 300 RLQPSDPRIG PPNKKPLLAT VNGPSDDRSS DDSRNWTHCT GPKKGSRENS GSGNLDSVSN 360 SEVSGAESVT THNLILSGPE KQDLPFIDFL GVGAT

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence

MSKTEHLKTR LGRFTGFQDL NSLPSSPYNP PQLSLYGAFP GAASLGERKP EMTEAGFQFL  60
APAMGQTDKA WAFEPLKSRG GVKTQHDVES DGHGGKADKT TVRPGLDEED EVNRCSNVGK  120
GGHVKLCARG HWRPAEDAKL KELVAQFGPQ NWNVIAEHLE GRSGKSCRLR WFNQLDPRIN  180
RKAFSEEEEE RLLTAHRMYG SKWAMIARLF PGRTDNAVKN HWHVIMARKQ REQSNVYRKR  240
KLLPPHMVFD VKPPNRNTSS TESTISSNRD ESASTCTKLS LSASSARPVP VLFGRSGPVQ  300
RLQPSDPRIG PPNKKPLLAT VNGPSDDRSS DDSRNWTHCT GPKKGSRENS GSGNLDSVSN  360
SEVSGAESVT THNLILSGPE KQDLPFIDFL GVGAT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69560.1	2e-69	MYB family protein