PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM72953.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family Trihelix
Protein Properties Length: 309aa    MW: 34920.3 Da    PI: 8.0586
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM72953.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix50.45.8e-1625115186
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 +W+++ + +Li+a  ++  +l+rg+l++++W+ev++++     ++++ +r+ +qCk++++ ++k+yk +k++ +  +   +s++ ++d+l+
  OWM72953.1  25 CWSEEATGTLIDAWGSRYVELNRGNLRQKDWREVADAVnslhgHSKKTHRTDVQCKNRIDTVKKKYKTEKARISASNGALTSSWIFYDRLD 115
                 7***********************************************************************99998888889******98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    
MTDSAVTPPA SGQSNPRPIP VREDCWSEEA TGTLIDAWGS RYVELNRGNL RQKDWREVAD  60
AVNSLHGHSK KTHRTDVQCK NRIDTVKKKY KTEKARISAS NGALTSSWIF YDRLDSLIGP  120
SLSAKKPSPS PPISPPVALP LPYKKMPSPA LAAAALPQKR PAERADDSYF RRNYSEVAAA  180
AAASVEVDDE DDEDLEEDRE SEEEDGEGMK KLAKAIERFG EVYQRVEGEK LRQTMDLEKQ  240
RMQFAKDLEV QRLKMFMDTQ VQLERIKHKR SASNGTRCSD KVSLSISYSR TKNEPIRQLW  300
VHSLIVFID
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.13e-40Trihelix family protein