PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM72374.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

bHLH

Protein Properties

Length: 657aa MW: 70276.2 Da PI: 8.6695

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM72374.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	46.8	5.3e-15	420	465	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 hn ErrRRdriN+++ L+el+P++ K++Ka++L +A+eY k+L OWM72374.1 420 VHNLSERRRRDRINEKMRVLQELIPNC-----NKVDKASMLDEAIEYCKNL 465 6***********************8.....6**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 657 aa Download sequence
MPLFELFRLA KGKLDSAQEK LTPCSTDSSA EPESGFGGLA WENGQVGMQS QCSPRDKKSL 60 SLNTPSLTTK LGGEDNVRAG KIGNLGFELS EFPESVPSAE ISLNQDDDMV PWLGYPISGS 120 LHSDYSSDFL PELPGVAVNE TSARNNFGSV AKTGNGQLCR DSFFTSLQNG NGLEGGTRTR 180 TSNMQLFSSS LPLQSQLSGS CLKLQTADSG PSINTSSAMN FSYFARPTVI VKSNNESKHK 240 MGSLGLSGME QAGNRDMDAA VDTTNTSNSK PVVSRSCLGK RVGPSNQSAV PRQRVGPKLS 300 ESKSYKVPVS ARKNEAVILE DNLKGKEDKF SNQSQRPCGT KGGLADGEKT LEPLGGTSSV 360 CSGNSVERAS DDLKHGLKRK SHETEESEGH SEDVGDEMVS ANKQTTARHT PSRRSRAAEV 420 HNLSERRRRD RINEKMRVLQ ELIPNCNKVD KASMLDEAIE YCKNLKLQLQ MMTMGGGFYV 480 PPMILPTGLQ PMGHIPFPNM GMGMGRDLEF GIGMPHMTMQ GAHFPGPLMS GLHGMAGSNL 540 HMYGVHGQGL PLPMPRAPLV PFLGGPVMKS ATGLSKACGM PGTVEKDPAT VSSGKESVQS 600 ISKQSPQNTD SSYLTKQHLS SQPMVVSSSG QGSDKKNARG FADPASRSIP RPKTTGL

Sequence ? help Back to Top

Protein Sequence Length: 657 aa Download sequence

MPLFELFRLA KGKLDSAQEK LTPCSTDSSA EPESGFGGLA WENGQVGMQS QCSPRDKKSL  60
SLNTPSLTTK LGGEDNVRAG KIGNLGFELS EFPESVPSAE ISLNQDDDMV PWLGYPISGS  120
LHSDYSSDFL PELPGVAVNE TSARNNFGSV AKTGNGQLCR DSFFTSLQNG NGLEGGTRTR  180
TSNMQLFSSS LPLQSQLSGS CLKLQTADSG PSINTSSAMN FSYFARPTVI VKSNNESKHK  240
MGSLGLSGME QAGNRDMDAA VDTTNTSNSK PVVSRSCLGK RVGPSNQSAV PRQRVGPKLS  300
ESKSYKVPVS ARKNEAVILE DNLKGKEDKF SNQSQRPCGT KGGLADGEKT LEPLGGTSSV  360
CSGNSVERAS DDLKHGLKRK SHETEESEGH SEDVGDEMVS ANKQTTARHT PSRRSRAAEV  420
HNLSERRRRD RINEKMRVLQ ELIPNCNKVD KASMLDEAIE YCKNLKLQLQ MMTMGGGFYV  480
PPMILPTGLQ PMGHIPFPNM GMGMGRDLEF GIGMPHMTMQ GAHFPGPLMS GLHGMAGSNL  540
HMYGVHGQGL PLPMPRAPLV PFLGGPVMKS ATGLSKACGM PGTVEKDPAT VSSGKESVQS  600
ISKQSPQNTD SSYLTKQHLS SQPMVVSSSG QGSDKKNARG FADPASRSIP RPKTTGL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	378	382	KRKSH
2	425	430	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	8e-59	bHLH family protein