PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM72144.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

ARF

Protein Properties

Length: 678aa MW: 75997.8 Da PI: 6.1884

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM72144.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	77.7	1.2e-24	116	216	1	98
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+kvlt sd++++g +++ kk+a+e+ ++ +++ ++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF + +++el+ OWM72144.1 116 FCKVLTASDTSTHGGFSILKKHATEClppldmNLATPT-QELVTKDLHGYEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLIAGDSFVFL--RGENGELR 211 99**************************97554444.59999*****************************************..449999 PP EEEE- CS B3 94 vkvfr 98 v+v+r OWM72144.1 212 VGVRR 216 ***98 PP
2	Auxin_resp	101.4	1.2e-33	242	321	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t++ F v+Y+Pr+ s+F++ ++k+++a+k+k++vGmRfkm+fe+ed +err+sGt+vg +d++p +Wp+S+WrsLk OWM72144.1 242 ASHAVQTQTLFVVYYKPRT--SQFIITLNKYLDAVKNKFAVGMRFKMSFEGEDTPERRFSGTIVGEEDISP-HWPDSRWRSLK 321 789*************6..9******************************************999.*******96 PP

Sequence ? help Back to Top
Protein Sequence Length: 678 aa Download sequence
MANRAEGDDD LYSELWKACA GPLVDVPREG DRVFYFPQGH MEQLEASMNQ ELNQRIPLFG 60 LSSKILCRVI HVQLLAEQDT DEVYAQITLL PEQNQEEPTS PDQCPPEPPR PTVHNFCKVL 120 TASDTSTHGG FSILKKHATE CLPPLDMNLA TPTQELVTKD LHGYEWKFKH IFRGQPRRHL 180 LTTGWSTFVT SKRLIAGDSF VFLRGENGEL RVGVRRLARQ QSSMPSSVIS SQSMHLGVLA 240 TASHAVQTQT LFVVYYKPRT SQFIITLNKY LDAVKNKFAV GMRFKMSFEG EDTPERRFSG 300 TIVGEEDISP HWPDSRWRSL KVQWDELASI LRPDRVSPWE IEPFVTSVPA PLPQSVSLKN 360 KRPRAAEVSG LGDAAAPALR SSMLTQSHDQ LSVTAEGKHG DHHVLWHHSQ TDMNGSCMNG 420 SGNCNSIPRT RNEGVWPSSS CVTVTQHVFE ETNEEDKAVS TWPIVPAYST AYPSKPKTEL 480 TLDPVEKVKK PETASSCRLF GIDLMSHSVS PRPQEKVPVE PLNVSAVSNE MSVADSSLKP 540 ELSKAPKDTN QGQQVWAKES QSKQNVISSR SRTKGIAVGR AVDLTVLDGY DQLIDELEEM 600 FDMKGEIRPR NKWEIVYTDD EGDMMLVGDY PWQEFRNMVR RIFIWSIHDV KKMSSGSKLP 660 ASSTEDEGTL RGVEQAET

Sequence ? help Back to Top

Protein Sequence Length: 678 aa Download sequence

MANRAEGDDD LYSELWKACA GPLVDVPREG DRVFYFPQGH MEQLEASMNQ ELNQRIPLFG  60
LSSKILCRVI HVQLLAEQDT DEVYAQITLL PEQNQEEPTS PDQCPPEPPR PTVHNFCKVL  120
TASDTSTHGG FSILKKHATE CLPPLDMNLA TPTQELVTKD LHGYEWKFKH IFRGQPRRHL  180
LTTGWSTFVT SKRLIAGDSF VFLRGENGEL RVGVRRLARQ QSSMPSSVIS SQSMHLGVLA  240
TASHAVQTQT LFVVYYKPRT SQFIITLNKY LDAVKNKFAV GMRFKMSFEG EDTPERRFSG  300
TIVGEEDISP HWPDSRWRSL KVQWDELASI LRPDRVSPWE IEPFVTSVPA PLPQSVSLKN  360
KRPRAAEVSG LGDAAAPALR SSMLTQSHDQ LSVTAEGKHG DHHVLWHHSQ TDMNGSCMNG  420
SGNCNSIPRT RNEGVWPSSS CVTVTQHVFE ETNEEDKAVS TWPIVPAYST AYPSKPKTEL  480
TLDPVEKVKK PETASSCRLF GIDLMSHSVS PRPQEKVPVE PLNVSAVSNE MSVADSSLKP  540
ELSKAPKDTN QGQQVWAKES QSKQNVISSR SRTKGIAVGR AVDLTVLDGY DQLIDELEEM  600
FDMKGEIRPR NKWEIVYTDD EGDMMLVGDY PWQEFRNMVR RIFIWSIHDV KKMSSGSKLP  660
ASSTEDEGTL RGVEQAET

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G23980.2	0.0	ARF family protein