PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM72005.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

MYB

Protein Properties

Length: 391aa MW: 43103 Da PI: 9.0072

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM72005.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.9	2e-17	52	98	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed +l ++vkq G ++W+ Ia+ ++ gR +kqc++rw+++l OWM72005.1 52 KGSWTEKEDNQLRELVKQNGARRWAFIAKSLP-GRVGKQCRERWYNHL 98 799***************************.***********97 PP
2	Myb_DNA-binding	51.7	2e-16	104	148	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +++WT eE+ l+++++ +G++ W+ Iar+++ gRt++++k++w+ + OWM72005.1 104 KDAWTIEEESVLARCHEVYGNK-WTVIARYLP-GRTDNSIKNHWNCH 148 679*****************.*****.*********976 PP

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence
MGCACTGSSQ HLNVSIAYLT REASGSAKCV LGKTRTQCFY RWHKVLNPEV VKGSWTEKED 60 NQLRELVKQN GARRWAFIAK SLPGRVGKQC RERWYNHLDP TIKKDAWTIE EESVLARCHE 120 VYGNKWTVIA RYLPGRTDNS IKNHWNCHMK ETFASRSTGC MMDKSETDPE FCSSDISSQI 180 LKVKSEEQSP GEEEHLPGRR PLLRDGTVLC PTDLVLGGFY SSVTKSSKSS PTNAVFCGDD 240 TPFGCSLGIS LPGAASGNLI TSPVQASPSL TCERPESPNR LSLRVPTAKS CSQMLYPCID 300 SLRSGPTESS GGSSTSAVDF EALSIMRRTT SKKMARLISS GSVSDYAFKT KTGVLYLQKP 360 GISAAIASLR KCLEHALHAS DRPFFKWKSQ H

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence

MGCACTGSSQ HLNVSIAYLT REASGSAKCV LGKTRTQCFY RWHKVLNPEV VKGSWTEKED  60
NQLRELVKQN GARRWAFIAK SLPGRVGKQC RERWYNHLDP TIKKDAWTIE EESVLARCHE  120
VYGNKWTVIA RYLPGRTDNS IKNHWNCHMK ETFASRSTGC MMDKSETDPE FCSSDISSQI  180
LKVKSEEQSP GEEEHLPGRR PLLRDGTVLC PTDLVLGGFY SSVTKSSKSS PTNAVFCGDD  240
TPFGCSLGIS LPGAASGNLI TSPVQASPSL TCERPESPNR LSLRVPTAKS CSQMLYPCID  300
SLRSGPTESS GGSSTSAVDF EALSIMRRTT SKKMARLISS GSVSDYAFKT KTGVLYLQKP  360
GISAAIASLR KCLEHALHAS DRPFFKWKSQ H

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	7e-55	MYB family protein