PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OWM71348.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 251aa MW: 27631.9 Da PI: 4.8311 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 68.7 | 5.4e-22 | 21 | 70 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 k+ienk r+vtf+kRr g++KKA+EL vLC+a+va+i +s++g+ + +s OWM71348.1 21 KKIENKFAREVTFTKRRGGLFKKASELAVLCGADVAIIAYSPHGNPFVFS 70 68*****************************************9876666 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence |
MAEGGGGGRR PRNCWRRTEL KKIENKFARE VTFTKRRGGL FKKASELAVL CGADVAIIAY 60 SPHGNPFVFS SSSSTDGVLR RFIGSPTSAA GEDSGVMPLS MSCEDRLSEY RRQEKEALSR 120 LNEAKKKQQE ASGKGKPGWW WDNPIEDLEA EELECYIECV ERLMEKASQK AEEMRTNPVH 180 TSATTSPASA SMASAGRNMV DTLDTGLFET SNGAEAAVKE EFGMGDEELE SLSSLLKEFE 240 HDDVGCMPLW S |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 7e-21 | M-type_MADS family protein |