PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM71266.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

C3H

Protein Properties

Length: 467aa MW: 49505.2 Da PI: 7.7871

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM71266.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	37.1	5.2e-12	44	69	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++rtG+C yG++C+F+H+p OWM71266.1 44 DEADCIHYLRTGFCGYGANCRFNHPP 69 6799********************97 PP
2	zf-CCCH	44.2	3.1e-14	97	121	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++lC++++rtGtCk+G++CkF+H++ OWM71266.1 97 QPLCQYYMRTGTCKFGASCKFNHPK 121 79*********************96 PP
3	zf-CCCH	23.7	8.1e-08	142	157	12	27
TS--TTTTT-SS-SSS CS zf-CCCH 12 tGtCkyGdrCkFaHgp 27 tG+Ck+G++CkF+H++ OWM71266.1 142 TGECKFGATCKFHHPQ 157 8*************97 PP
4	zf-CCCH	37	5.7e-12	295	321	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG Ck+G++C+++H++ OWM71266.1 295 PGQPECQYYLKTGDCKFGSSCRYHHPM 321 5789*********************95 PP
5	zf-CCCH	27.7	4.7e-09	344	367	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C +f++ G Ck+G CkF H++ OWM71266.1 344 SICTHFQQHGVCKFGRACKFDHPM 367 68********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 467 aa Download sequence
MERYGGSGGE PQSSDPSTEA ETGLEEATWR LGLEGAKSYP ERPDEADCIH YLRTGFCGYG 60 ANCRFNHPPE RGLKFYAAQV MGAARAGTME YPERAGQPLC QYYMRTGTCK FGASCKFNHP 120 KQGAGSAAPV SLNYYGYPLR PTGECKFGAT CKFHHPQPAD IPVSAPLPVQ HPPTMPTPFV 180 GPALYPVQSS SVHSSQPYGF VVARPSLLPS YGPGPYGPVL VSPGMVQYPG WSPYQGTVNP 240 GASPTALPTS ASSSFHGMAQ FSPSTSTFPG PYQPAVSSAA ASSGSQKEQS YPQRPGQPEC 300 QYYLKTGDCK FGSSCRYHHP MDLTVRGTST VLSSLGLPLR PGASICTHFQ QHGVCKFGRA 360 CKFDHPMREL SYSPSASSLT DMPVAPHPVG SFLGTLAPSS SSSDLRPEVI SGATNVDSAS 420 TRAFSSMSTS SASVCTIPSK DEPGSSQRIS DQNPSVISKN TEDQGSS

Sequence ? help Back to Top

Protein Sequence Length: 467 aa Download sequence

MERYGGSGGE PQSSDPSTEA ETGLEEATWR LGLEGAKSYP ERPDEADCIH YLRTGFCGYG  60
ANCRFNHPPE RGLKFYAAQV MGAARAGTME YPERAGQPLC QYYMRTGTCK FGASCKFNHP  120
KQGAGSAAPV SLNYYGYPLR PTGECKFGAT CKFHHPQPAD IPVSAPLPVQ HPPTMPTPFV  180
GPALYPVQSS SVHSSQPYGF VVARPSLLPS YGPGPYGPVL VSPGMVQYPG WSPYQGTVNP  240
GASPTALPTS ASSSFHGMAQ FSPSTSTFPG PYQPAVSSAA ASSGSQKEQS YPQRPGQPEC  300
QYYLKTGDCK FGSSCRYHHP MDLTVRGTST VLSSLGLPLR PGASICTHFQ QHGVCKFGRA  360
CKFDHPMREL SYSPSASSLT DMPVAPHPVG SFLGTLAPSS SSSDLRPEVI SGATNVDSAS  420
TRAFSSMSTS SASVCTIPSK DEPGSSQRIS DQNPSVISKN TEDQGSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-111	C3H family protein