PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM71148.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family GATA
Protein Properties Length: 156aa    MW: 16622.8 Da    PI: 10.7642
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM71148.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.25.3e-193064135
        GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                C+ Cgt+kTplWR gp g+k+LCnaCG++ rkk++
  OWM71148.1 30 CADCGTSKTPLWRGGPAGPKSLCNACGIRSRKKRR 64
                ********************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    
MSDPTDKGAE AAADVPSSDD GHSGENKKTC ADCGTSKTPL WRGGPAGPKS LCNACGIRSR  60
KKRRVIVGLS KGSEDMKKSK KGSMGGLNPN NNSKAKFGDP WKRRLLGLGR KVSFQRPPSP  120
SSSSSEADQR QRRRKLGEVE QAAVLLMALS YGSVYA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16181KKRRVIVGLSKGSEDMKKSKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.12e-40GATA family protein