PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OWM70793.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
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Family | LBD | ||||||||
Protein Properties | Length: 210aa MW: 22238.3 Da PI: 8.5095 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 92.7 | 4.2e-29 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C+vlr++C+++Cvl+ ++ p+ q +++ +++++FG+s +l+l++a+pe +r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+++++ OWM70793.1 2 SCNGCRVLRKGCSESCVLRTCLqwiptPEGQGNATLFLARFFGRSDLLSLIAAVPEPQRPALFQSLLFEACGRTVNPVNGAVGLLSSGNWHICQAAVDT 100 6************************999999****************************************************************9998 PP DUF260 95 all 97 +l OWM70793.1 101 VLS 103 765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence |
MSCNGCRVLR KGCSESCVLR TCLQWIPTPE GQGNATLFLA RFFGRSDLLS LIAAVPEPQR 60 PALFQSLLFE ACGRTVNPVN GAVGLLSSGN WHICQAAVDT VLSGGALQPL PGILSSALPR 120 DELSTSTCRG QTLLGHQFTS SSPAAQGDLN NCNLGLNSAN KFSGKRRGKR SHFMENWPVK 180 TASTLSSEVS EVATVSSGGG QETKLLNLFI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 7e-61 | LBD family protein |