PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM70195.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

ARF

Protein Properties

Length: 676aa MW: 74457 Da PI: 7.2455

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM70195.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	76.6	2.8e-24	113	213	1	98
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f k+lt+sd+++ g +++p+ +ae++ +++ + t++ +d +g+sW++++iyr++++r++lt+GW++Fv++++L +gD++vF + +++ l OWM70195.1 113 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TIIAKDVHGESWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFL--RAENGDL 207 89**************************986445444..8********************************************..4488889 PP EEEEE- CS B3 93 vvkvfr 98 +v+++r OWM70195.1 208 CVGIRR 213 **98 PP
2	Auxin_resp	107	2.1e-35	272	355	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa a+++ +F+v Y+Pra+t+eF vk+++v+++++++++ GmRfkm fetedss++++ +Gt++ v+ +dp++WpnS+Wr+L+ OWM70195.1 272 AAALAASGRPFDVAYYPRAGTPEFFVKASSVSHSMTIQWCSGMRFKMPFETEDSSRISWfMGTISLVQVADPIHWPNSPWRLLQ 355 6788999***************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 676 aa Download sequence
MKRNTVEKCL DPQLWHACAG GMVQMPPLNS KVFYFPQGHA EHAQGPVDFG NSHNIPPLVL 60 CRLAAIKYMA DRETDEVFAR ITLVPVKVQG LDLDNDGLMD HDGAESPEKA ASFAKTLTQS 120 DANNGGGFSV PRYCAETIFP RLDYSAEPPV QTIIAKDVHG ESWKFRHIYR GTPRRHLLTT 180 GWSNFVNQKK LVAGDSIVFL RAENGDLCVG IRRVKRGGFG GGPEYGSGWN SSSGPFGGYS 240 MFMREDGNNN PMQKASDNGG VGRVTAESVV RAAALAASGR PFDVAYYPRA GTPEFFVKAS 300 SVSHSMTIQW CSGMRFKMPF ETEDSSRISW FMGTISLVQV ADPIHWPNSP WRLLQVAWDE 360 PDLLQNVKRV SPWLVELVST MPSIHLSPFS PPRKKLRVPP TADFSLMEQL QLPSSFPSNP 420 LLMGQSNSPL CYIPDNIIPA GIQGARHAHY GLSPSDLSLN KLHSSSLFLN KSRHHLDNHN 480 FAPPLPTRFN HEPNGNPNTN NISCLLTMAT PANHFKENGE KKSGSGGSPH ILLFGQLILT 540 QHQNSETSSS GPPETSSSGP PETSSEEDNF QTRRKDNNNR KTELGLGVET GHCKVFMESE 600 DVGRTLDLSV LGSYEELYRN LAEMFGIEGS EMLRNILYRD AAGAIKHAGE EPFSDFLKTA 660 KRLTIPAGSS IRELLR

Sequence ? help Back to Top

Protein Sequence Length: 676 aa Download sequence

MKRNTVEKCL DPQLWHACAG GMVQMPPLNS KVFYFPQGHA EHAQGPVDFG NSHNIPPLVL  60
CRLAAIKYMA DRETDEVFAR ITLVPVKVQG LDLDNDGLMD HDGAESPEKA ASFAKTLTQS  120
DANNGGGFSV PRYCAETIFP RLDYSAEPPV QTIIAKDVHG ESWKFRHIYR GTPRRHLLTT  180
GWSNFVNQKK LVAGDSIVFL RAENGDLCVG IRRVKRGGFG GGPEYGSGWN SSSGPFGGYS  240
MFMREDGNNN PMQKASDNGG VGRVTAESVV RAAALAASGR PFDVAYYPRA GTPEFFVKAS  300
SVSHSMTIQW CSGMRFKMPF ETEDSSRISW FMGTISLVQV ADPIHWPNSP WRLLQVAWDE  360
PDLLQNVKRV SPWLVELVST MPSIHLSPFS PPRKKLRVPP TADFSLMEQL QLPSSFPSNP  420
LLMGQSNSPL CYIPDNIIPA GIQGARHAHY GLSPSDLSLN KLHSSSLFLN KSRHHLDNHN  480
FAPPLPTRFN HEPNGNPNTN NISCLLTMAT PANHFKENGE KKSGSGGSPH ILLFGQLILT  540
QHQNSETSSS GPPETSSSGP PETSSEEDNF QTRRKDNNNR KTELGLGVET GHCKVFMESE  600
DVGRTLDLSV LGSYEELYRN LAEMFGIEGS EMLRNILYRD AAGAIKHAGE EPFSDFLKTA  660
KRLTIPAGSS IRELLR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	ARF family protein