PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OWM70034.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 229aa MW: 25275.4 Da PI: 4.5328 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126.1 | 1.7e-39 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +C aCk+lrrkC+++Cv+apyf+ +q +++fa+vhk+FGasnv+kll +lp + r+da+ ++ yeA ar+rdP+yG+v++i++lq+q+++l++e++ l+ OWM70034.1 7 SCGACKFLRRKCTSECVFAPYFCYDQaANHFAAVHKVFGASNVSKLLLHLPVQMRSDAAVTISYEALARIRDPIYGCVAHIFALQEQVANLQEEIEILG 105 6************************978*******************************************************************9987 PP DUF260 99 ee 100 ++ OWM70034.1 106 TQ 107 76 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 229 aa Download sequence |
MTGLGSSCGA CKFLRRKCTS ECVFAPYFCY DQAANHFAAV HKVFGASNVS KLLLHLPVQM 60 RSDAAVTISY EALARIRDPI YGCVAHIFAL QEQVANLQEE IEILGTQMAN LGILSWGGSH 120 VNNNNFVSNA GSHFPQTDPI NLQFYQDQYD PVFPYAGNPP ESRDLGEAVL TGNRIDNNNS 180 EFPPLYGGEV LDQFCEDTDP SILERLFDGV DKEIFTLYPW LNNGTAPGK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G06080.1 | 2e-61 | LBD family protein |