PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OWM69890.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
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Family | LBD | ||||||||
Protein Properties | Length: 233aa MW: 25349 Da PI: 8.8737 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 135.1 | 2.7e-42 | 47 | 146 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++pe++r da++slvyeA++r+rdPvyG++g i++lqqq+++l+ael+++++ OWM69890.1 47 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQSLQAELNAVRA 145 7***********************************************************************************************998 PP DUF260 100 e 100 e OWM69890.1 146 E 146 7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence |
MSRERERLDE IGKKIKREAD VAPSRLMGRR HMLSPQSQAG TLNTITPCAA CKLLRRRCAQ 60 ECPFSPYFSP HEPQKFASVH KVFGASNVSK MLMEVPESQR ADAANSLVYE ANVRLRDPVY 120 GCMGAISALQ QQVQSLQAEL NAVRAEILKY KYREANVLPS SSHMTLLSSG PGVNIVSVAA 180 PPPILQPQPP SPQPSSLPPP AAISCSSVFT QPTTSSCTTD FNSISSENVS YFG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 2e-88 | LBD family protein |