PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM69890.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family LBD
Protein Properties Length: 233aa    MW: 25349 Da    PI: 8.8737
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM69890.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260135.12.7e-42471461100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                 +CaaCk+lrr+Ca++C+++pyf  ++p+kfa vhk+FGasnv+k+l ++pe++r da++slvyeA++r+rdPvyG++g i++lqqq+++l+ael+++++
  OWM69890.1  47 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQSLQAELNAVRA 145
                 7***********************************************************************************************998 PP

      DUF260 100 e 100
                 e
  OWM69890.1 146 E 146
                 7 PP

Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
MSRERERLDE IGKKIKREAD VAPSRLMGRR HMLSPQSQAG TLNTITPCAA CKLLRRRCAQ  60
ECPFSPYFSP HEPQKFASVH KVFGASNVSK MLMEVPESQR ADAANSLVYE ANVRLRDPVY  120
GCMGAISALQ QQVQSLQAEL NAVRAEILKY KYREANVLPS SSHMTLLSSG PGVNIVSVAA  180
PPPILQPQPP SPQPSSLPPP AAISCSSVFT QPTTSSCTTD FNSISSENVS YFG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40470.12e-88LBD family protein