PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OWM69783.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
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Family | LBD | ||||||||
Protein Properties | Length: 261aa MW: 30188.7 Da PI: 6.5057 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 105 | 6.2e-33 | 6 | 103 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 aC C ++r++C++dC+++pyfp +qp+ ++n+ +lFG++n+ kl++++++e+ ed+m+s++ye + a+d vyG++g + klqqq++++++el++++ OWM69783.1 6 ACGLCHHQRKRCPQDCPFRPYFPVDQPELYRNAIRLFGVANLKKLMAKVQPEQYEDTMTSIIYEVNRHAEDSVYGCYGALIKLQQQVARAEQELKAIN 103 6********************************************************************************************99876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence |
MVKGRACGLC HHQRKRCPQD CPFRPYFPVD QPELYRNAIR LFGVANLKKL MAKVQPEQYE 60 DTMTSIIYEV NRHAEDSVYG CYGALIKLQQ QVARAEQELK AINSWIASFR RLSEQPDDHD 120 HRCHPLSLPS NFWVEYTHGH DTVIQSDAAA SLEIMKSSMV NQQSRNQDRE SSVVNEQPHR 180 CNLEASMVNE RTHRSNLDPV IDEWPRYTER NLGNQNPLIQ SDQRYAVAQQ LPRALEKEIA 240 NHEDEPSRPL METTHSDING N |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 3e-26 | LBD family protein |