PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM69140.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

SRS

Protein Properties

Length: 463aa MW: 47368.2 Da PI: 8.1913

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM69140.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	216.3	7.1e-67	246	408	3	153
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstklssaeskkel 100 gt++CqdCGnqakkdC+++RCRtCCksrgfdCathvkstWvpaa+rrerq + +a + a s+ +++ +k+ r s+++++ s+t++s++++++++ OWM69140.1 246 GGTTTCQDCGNQAKKDCSYRRCRTCCKSRGFDCATHVKSTWVPAARRRERQLMGTAGAGGGAGSStSTSGAKKARLIPSQTTTTNSHTSTSNTTPPRSF 344 5789********************************************9887776665555442778888888888899999999*******9 PP DUF702 101 etss...........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 +t+ lP +v+++avf+cvrv++vddge+e+aYq++v+igGhvfkG+LydqG+e OWM69140.1 345 DTAGssrqdpsfkesLPGQVRTPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVFKGFLYDQGIE 408 9987899*****************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 463 aa Download sequence
MEKLMEMREK RSAAATEAEQ GKTVVATTRR QLSDSGAFAD WVASSSSSAL GDLSLGFNAG 60 PTPHVGPTPT PHPPSSTSAP LWSHPNTSSS RSAVNYGLPP EMGMFVVAPA SSFHHHHHHH 120 HHDPVVSADN SAPGSTALGV GVGVGVIPLL AATPCLGPPN IAVDDPDNNN SNVLAARNRG 180 AGSGGTGGGG IQLWQNHQQA SQLTTHHYLK KPTILDQSSN PANLLSGGVG GVGSGASITA 240 AAAAGGGTTT CQDCGNQAKK DCSYRRCRTC CKSRGFDCAT HVKSTWVPAA RRRERQLMGT 300 AGAGGGAGSS TSTSGAKKAR LIPSQTTTTN SHTSTSNTTP PRSFDTAGSS RQDPSFKESL 360 PGQVRTPAVF KCVRVTAVDD GEDEYAYQAV VKIGGHVFKG FLYDQGIEGR EGLPNISDLH 420 LGGGGGGDRN AASSSSPMVD PSDVYAASGG GLLGGPTYGN PMN

Sequence ? help Back to Top

Protein Sequence Length: 463 aa Download sequence

MEKLMEMREK RSAAATEAEQ GKTVVATTRR QLSDSGAFAD WVASSSSSAL GDLSLGFNAG  60
PTPHVGPTPT PHPPSSTSAP LWSHPNTSSS RSAVNYGLPP EMGMFVVAPA SSFHHHHHHH  120
HHDPVVSADN SAPGSTALGV GVGVGVIPLL AATPCLGPPN IAVDDPDNNN SNVLAARNRG  180
AGSGGTGGGG IQLWQNHQQA SQLTTHHYLK KPTILDQSSN PANLLSGGVG GVGSGASITA  240
AAAAGGGTTT CQDCGNQAKK DCSYRRCRTC CKSRGFDCAT HVKSTWVPAA RRRERQLMGT  300
AGAGGGAGSS TSTSGAKKAR LIPSQTTTTN SHTSTSNTTP PRSFDTAGSS RQDPSFKESL  360
PGQVRTPAVF KCVRVTAVDD GEDEYAYQAV VKIGGHVFKG FLYDQGIEGR EGLPNISDLH  420
LGGGGGGDRN AASSSSPMVD PSDVYAASGG GLLGGPTYGN PMN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.1	2e-68	SRS family protein