PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM68424.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family C3H
Protein Properties Length: 440aa    MW: 49867.3 Da    PI: 9.4981
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM68424.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.41.2e-08417439225
                 -S---SGGGGTS--TTTTT-SS-S CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                 k+ lCr+f + G C++Gd+CkF H
  OWM68424.1 417 KRQLCRHFNK-GRCHFGDNCKFLH 439
                 899*******.************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    
METDEPYSGD DISGSDYDSD DSDPSYDILE DAHSRFSNLS VKKKGKLRVC EDSDSSDEGD  60
AIEVIVPELD EKDQKSLEIV QILIEDGDVD KLKVDQCKVY LRKNGLRLTG TKETLIKRIK  120
EHLQITNGGG EKKYPPSSFV INCKGDACIG DVVMFQQNVY YDQFNLASRS ASGPPIGKRI  180
VTGRIIKESY GSAKQQHTFT IEVLWSKGEK PLPPLHPLLI KGRNLYRFDT MRQRWEDEAE  240
RQKNLMEKHS RGSLARSDRE ARLREKERRK ALKAERLAMK KKEKVNCARS GSTFTMKNNT  300
IRAPKAGPFV TNSDPRIPPR ALGLVRNRAV HAHGPQDLVI LQHPQGGQDQ NHHAAWKNPG  360
ISQSFPGRKE VLCHNYLGSS TLCPSNSTHI QNRDRHPLAN VNQYPRIGTQ GRVEAHKRQL  420
CRHFNKGRCH FGDNCKFLHE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1263268LREKER
2276285RLAMKKKEKV