PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM67627.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

bHLH

Protein Properties

Length: 412aa MW: 45967.7 Da PI: 5.3131

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM67627.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38	3e-12	205	256	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ + Lr+l+P + + ++ + a+i A+e++++L+ OWM67627.1 205 QRMTHIAVERNRRRQMNEHLRVLRSLMPGS---YVQRGDQASIIGGAIEFVRELE 256 79**************************...9***************9995 PP

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence
MLYPSKLKLW QASFPGFDYS LDPNHHLHQP LVKPHSGEAS GSGESSNNHG MIDYMLHGIS 60 PVQQNQQIGN PGFFGSGRLD KLSFADVMQF ADFGPKLALN QSKNPEDEAG VDPICFLKFP 120 VLNDKSESQS LIADIDNRAD LFEENDGGQD DEEARVSDNI NLVQLRDGGD QDLIDQTNAT 180 IGEVKNNNKR KRPRSIKTSE EVESQRMTHI AVERNRRRQM NEHLRVLRSL MPGSYVQRGD 240 QASIIGGAIE FVRELEQLLQ CLESQKRRRV YGDGGGAPSQ MGQLPPQPQF LPPNNNLPIP 300 GDQMNKLVEF DTGLREETAE SKSCLADIEV KVLGFDAMIK ILSRRRPGQL IKTIAALEDL 360 QLTILHTNIT TIEHTVLYSF NVKVASETRF TAEDIACSAQ QIFSFIHANS SM

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence

MLYPSKLKLW QASFPGFDYS LDPNHHLHQP LVKPHSGEAS GSGESSNNHG MIDYMLHGIS  60
PVQQNQQIGN PGFFGSGRLD KLSFADVMQF ADFGPKLALN QSKNPEDEAG VDPICFLKFP  120
VLNDKSESQS LIADIDNRAD LFEENDGGQD DEEARVSDNI NLVQLRDGGD QDLIDQTNAT  180
IGEVKNNNKR KRPRSIKTSE EVESQRMTHI AVERNRRRQM NEHLRVLRSL MPGSYVQRGD  240
QASIIGGAIE FVRELEQLLQ CLESQKRRRV YGDGGGAPSQ MGQLPPQPQF LPPNNNLPIP  300
GDQMNKLVEF DTGLREETAE SKSCLADIEV KVLGFDAMIK ILSRRRPGQL IKTIAALEDL  360
QLTILHTNIT TIEHTVLYSF NVKVASETRF TAEDIACSAQ QIFSFIHANS SM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	206	217	RMTHIAVERNRR
2	266	270	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24140.1	1e-126	bHLH family protein