PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM66361.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family GRAS
Protein Properties Length: 549aa    MW: 59337.8 Da    PI: 6.354
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM66361.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS305.99.6e-941725483374
        GRAS   3 elLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                 e L+++A++v+sg+l+ aq +Larl+++ +sp+g+p++R+ ++f+eAL++ l++ +s+++   pp+ +++ + +++++a+k+fs +sPi  fsh+taNq
  OWM66361.1 172 EELIQVADCVDSGELQPAQVILARLNHRlRSPAGKPLHRAGFFFKEALQSLLVS-GSNCS---PPQLSTWPDIVQTIKAYKAFSGISPISMFSHFTANQ 266
                 68*************************99************************9.55555...888899999*************************** PP

        GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                 a+le ++ +  vHi+Dfdi+ G+Q+++L+++ a+R+  + +p lR+T+v+++e   + e++ ++e+La+fA+ l+++f++++++ +++++l++++ ++ 
  OWM66361.1 267 ALLETLDDSPLVHIVDFDIGLGGQYASLMREVAERArgSHAPALRVTAVVAEE--YAVETRLIRENLAQFAHDLNLRFSIDFVLNRAFDMLSFRAVKFV 363
                 ***********************************9667799*********66..9999***********************9999************* PP

        GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe........adh.nsesFlerflealeyysalfdsleaklpres......ee 281
                  gE+laV+l+      l + ++++     +L  +++lsPkvvv+ ++e        +   +s+sF + f+++le+ys++f+sl+a ++         ++
  OWM66361.1 364 DGESLAVHLSPGTIFRLGSAGHVAR----FLGDLRRLSPKVVVFGDSEpwwglcgsT-GgGSGSFRRSFVSCLEHYSTVFESLDAAAGCGGagsgggDW 457
                 ********99977777756666555....*******************999886422.24788********************8885433233466899 PP

        GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  +k+E  l++++i ++v ++ ++   ++  +   re +++aG+++v+ls++a  qa++ll kv+++g++v +++++lvl+W+dr+Lv++SaWr
  OWM66361.1 458 PRKIETYLMQPRINSAVEAAASA--SKRGAVPPGREVFQAAGMRAVQLSQFADYQAECLLGKVQVRGFHVAKRQAELVLCWHDRALVATSAWR 548
                 *****************999998..566678999**********************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    
MRVPVTTSQQ QQNNDSLKPN ISVPAAAAIP AGNNHHLSLC SYEPTSVLDL RSPVSSSDLK  60
PPPASSDLTS TTLPQPHHGW GDGDGHHHAL QSLDWDSIMK DLDLHDDVSA PAPLNPPEST  120
HFVSNSSDFA ALSDVYGSCH QSLAHVPTSN YGSLELGGEV CNNWGFAFDF LEELIQVADC  180
VDSGELQPAQ VILARLNHRL RSPAGKPLHR AGFFFKEALQ SLLVSGSNCS PPQLSTWPDI  240
VQTIKAYKAF SGISPISMFS HFTANQALLE TLDDSPLVHI VDFDIGLGGQ YASLMREVAE  300
RARGSHAPAL RVTAVVAEEY AVETRLIREN LAQFAHDLNL RFSIDFVLNR AFDMLSFRAV  360
KFVDGESLAV HLSPGTIFRL GSAGHVARFL GDLRRLSPKV VVFGDSEPWW GLCGSTGGGS  420
GSFRRSFVSC LEHYSTVFES LDAAAGCGGA GSGGGDWPRK IETYLMQPRI NSAVEAAASA  480
SKRGAVPPGR EVFQAAGMRA VQLSQFADYQ AECLLGKVQV RGFHVAKRQA ELVLCWHDRA  540
LVATSAWRF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-140GRAS family protein