PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OWM66231.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
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Family | LBD | ||||||||
Protein Properties | Length: 339aa MW: 36464.8 Da PI: 7.2938 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 136.2 | 1.2e-42 | 7 | 106 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk++rrkC+++C++apyfpa+qp+kfa++hk+FGasnv kll++l ++reda++sl+yeAe r+rdPvyG+vg+i+ lqq+l+ l++el ++++ OWM66231.1 7 PCAACKLQRRKCTQECIFAPYFPADQPQKFAYIHKVFGASNVAKLLSELGVHQREDAVHSLAYEAETRLRDPVYGCVGLISILQQKLRLLQNELTSARK 105 7*********************************************************************************************99988 PP DUF260 100 e 100 e OWM66231.1 106 E 106 7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence |
MSSSSSPCAA CKLQRRKCTQ ECIFAPYFPA DQPQKFAYIH KVFGASNVAK LLSELGVHQR 60 EDAVHSLAYE AETRLRDPVY GCVGLISILQ QKLRLLQNEL TSARKELATY IGPQAMLPML 120 PAGHQAGPPG AFAQHMGGTG PSSSLAVTPY MGAVPVPLPP HHQPSGALVI REPQAQAQHQ 180 QQQVGFDPHG HQIVAAAAAH QEMYRGLYER QRQQQEIKFS GAGGFDGIML GNGYNHPGAG 240 GVAAQAAVSP SLALGGTFEP VAAYQIHQPG DPHAHHAGSS SGAAFHHQHP DQPHHQHNFQ 300 PHLSLQPQHQ QTMVHQPEQQ EQQGSGSDER KSCVEGPSC |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66870.1 | 3e-65 | LBD family protein |