PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM66113.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

bHLH

Protein Properties

Length: 542aa MW: 60810.4 Da PI: 7.764

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM66113.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.7	7.5e-12	362	407	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h + Er+RR+++N++++ L+ llP+ +K +Ka++L + eY+ sLq OWM66113.1 362 HMMSERKRREKLNESLQALKALLPPG-----TKRDKASVLATTREYLTSLQ 407 8899******************97.....8***************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 542 aa Download sequence
MDTVFQRDAD DRANFLHNLA QTTGCSYVCL WSYVPLSSYL CSLDGLYQET GSSVQPSSSS 60 ESLARRLFND YRACLFIIDD NHRTVPGTAF RNNLCFFEVR EEDFPRMATN RAQQEFYRAV 120 FMGCRTGEIE LGFSDMSPVD AETLLRNIFP EDFSRQVAVQ ELPRLIEQQL NPPSSSSSSW 180 RSLSIDSPEY SSILFNLPGN SFMPDSLKEV APTINPQTAS PQTLATAAPA IIIPQQLQAI 240 QALARISNFP TPGSEHEAIR RAFLAVITSP SSSTSSSQQQ QQQQNLPGIN QQANLGDSAF 300 RRYSSALIPT AAQMKRSPHR RDNMTKRAIA YFRNLNLMRF NRQRAQASAG SRPTPTSTQL 360 HHMMSERKRR EKLNESLQAL KALLPPGTKR DKASVLATTR EYLTSLQAQI EELRQRNAAL 420 EAQLSPAKEA GNEEPGTPMN GNPIDVRVRQ TSESTSQDRT ADLQVVVRRE CSSTQLVIHI 480 LEFLRRLNNV HLMSMEADTC VAEAGVVTRV NLRLRIEGNE WDESAFQEAV RRVVADVAQR 540 QF

Sequence ? help Back to Top

Protein Sequence Length: 542 aa Download sequence

MDTVFQRDAD DRANFLHNLA QTTGCSYVCL WSYVPLSSYL CSLDGLYQET GSSVQPSSSS  60
ESLARRLFND YRACLFIIDD NHRTVPGTAF RNNLCFFEVR EEDFPRMATN RAQQEFYRAV  120
FMGCRTGEIE LGFSDMSPVD AETLLRNIFP EDFSRQVAVQ ELPRLIEQQL NPPSSSSSSW  180
RSLSIDSPEY SSILFNLPGN SFMPDSLKEV APTINPQTAS PQTLATAAPA IIIPQQLQAI  240
QALARISNFP TPGSEHEAIR RAFLAVITSP SSSTSSSQQQ QQQQNLPGIN QQANLGDSAF  300
RRYSSALIPT AAQMKRSPHR RDNMTKRAIA YFRNLNLMRF NRQRAQASAG SRPTPTSTQL  360
HHMMSERKRR EKLNESLQAL KALLPPGTKR DKASVLATTR EYLTSLQAQI EELRQRNAAL  420
EAQLSPAKEA GNEEPGTPMN GNPIDVRVRQ TSESTSQDRT ADLQVVVRRE CSSTQLVIHI  480
LEFLRRLNNV HLMSMEADTC VAEAGVVTRV NLRLRIEGNE WDESAFQEAV RRVVADVAQR  540
QF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	366	371	ERKRRE
2	367	372	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	4e-63	bHLH family protein