PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM65891.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

CO-like

Protein Properties

Length: 352aa MW: 37932.7 Da PI: 6.4295

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM65891.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	25	4e-08	19	60	4	39
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39 r C+ ++ + lfC+ ++ +lC C +e+H g H++ OWM65891.1 19 RPCDSCKGAAAALFCRADSAFLCLGCDDEIH-GankvasrHER 60 78****99*******************.54677777765 PP
2	zf-B_box	22.7	2e-07	61	103	3	39
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 + C+ +e+ ++ C+ + lC +C +H+ H + OWM65891.1 61 VWLCEVCEQAPAAVTCRADAAALCSSCDADIHSAnplarrHHR 103 689*****************************65788888655 PP
3	CCT	70.5	4.1e-24	279	322	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRYkeKrk+RkFeK+irY+sRKa+AesRpR+KGrF+k++ OWM65891.1 279 REARVLRYKEKRKNRKFEKTIRYASRKAYAESRPRIKGRFAKRT 322 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence
MGIGGERVNG GPGWRVPSRP CDSCKGAAAA LFCRADSAFL CLGCDDEIHG ANKVASRHER 60 VWLCEVCEQA PAAVTCRADA AALCSSCDAD IHSANPLARR HHRLPVEPLL DPSSAAGGHL 120 VKPSHMLHGL LLPQLPEDAD VPAVIDPEVG EVVKPVDPFF NDPYFDLDFG NSDGLNASGA 180 DGLVPVQSKP GPDPVELSPE KCLHVDFGRS AKLNGSFNLP AQTFTRTASS SSQDFGVVPD 240 GSEMSYPYIG SMSSSGLTEP SHNTHPINIQ ATQLSGVDRE ARVLRYKEKR KNRKFEKTIR 300 YASRKAYAES RPRIKGRFAK RTEVEGQLVD NIYGACPSVF FTDAEFGVVP TF

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence

MGIGGERVNG GPGWRVPSRP CDSCKGAAAA LFCRADSAFL CLGCDDEIHG ANKVASRHER  60
VWLCEVCEQA PAAVTCRADA AALCSSCDAD IHSANPLARR HHRLPVEPLL DPSSAAGGHL  120
VKPSHMLHGL LLPQLPEDAD VPAVIDPEVG EVVKPVDPFF NDPYFDLDFG NSDGLNASGA  180
DGLVPVQSKP GPDPVELSPE KCLHVDFGRS AKLNGSFNLP AQTFTRTASS SSQDFGVVPD  240
GSEMSYPYIG SMSSSGLTEP SHNTHPINIQ ATQLSGVDRE ARVLRYKEKR KNRKFEKTIR  300
YASRKAYAES RPRIKGRFAK RTEVEGQLVD NIYGACPSVF FTDAEFGVVP TF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57660.1	9e-86	CO-like family protein