PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM65674.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family LBD
Protein Properties Length: 247aa    MW: 26881.6 Da    PI: 8.1545
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM65674.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260100.41.7e-312103197
      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                 +C++C+vlr++C+++C+l+p++     p++q +++ +v+k+FG++ ++++++++pe++r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+++e+
  OWM65674.1   2 SCNGCRVLRKGCSESCILRPCLqwiesPEAQGHATVFVAKFFGRAGLMSFISNVPESQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHICQAAVET 100
                 6***********************************************************************************************998 PP

      DUF260  95 all 97 
                 +l+
  OWM65674.1 101 VLR 103
                 876 PP

Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    
MSCNGCRVLR KGCSESCILR PCLQWIESPE AQGHATVFVA KFFGRAGLMS FISNVPESQR  60
PALFQSLLFE ACGRTVNPVN GAVGLLWTGN WHICQAAVET VLRGGTLRPI PELLDGSASG  120
SAPDEASEAE EVTCTTDAWN NLRQERTSGQ SHFSTSRSRV SPKRRKVTED IKPHQQIDLD  180
LRLTPRLSAL SGKAPVLKLQ PEAKRRLGSP SMNSEESVTT TNTCLVDSGA GEGEANNKEM  240
KLLKLFI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.12e-82LBD family protein