PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM65225.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

TCP

Protein Properties

Length: 395aa MW: 43927.7 Da PI: 6.7054

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM65225.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	91	2.6e-28	52	144	3	89
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg........k 89 g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl + k+ i+ l+ ++ ++ c + +++ ++ns+s+ + OWM65225.1 52 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLGLSQPSKVIDWLLDATKQDIDNLPPLQMPQG--CGQFHQQMFGDNSGSRnlgnlllpH 144 79*************************************************************55555..8555555555544444444444441 PP

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence
MITNSTDEAG LQAKLEEQKN DGRINSQAVP SSSRQWSSFR NPRIVRVSRS FGGKDRHSKV 60 CTIRGLRDRR IRLSVPTAIQ LYDLQDKLGL SQPSKVIDWL LDATKQDIDN LPPLQMPQGC 120 GQFHQQMFGD NSGSRNLGNL LLPHEPSTSQ LSLSPFFPMS NSTFLSKHGI KINDNVDGDG 180 DTTARVKSSK YWDIDLGLTS KDKEVLQTEP LGDEKGKSIE MNELQKHVGF SGHYAQPSAQ 240 NFFPVVGYSS LPSGLTNNAM PYSYNQWEPS NLSLSHVGGF QHQMENFLHS NSVSSLPSSS 300 SLLANLSSRS QLYFCPQTVA PSLFPTYPPY LAASSTENDS RQINHFQLLS SSSYQPVVPS 360 HHLSNPQMKS FQTNTNTKFL HSQDDTQSQD DEEAD

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence

MITNSTDEAG LQAKLEEQKN DGRINSQAVP SSSRQWSSFR NPRIVRVSRS FGGKDRHSKV  60
CTIRGLRDRR IRLSVPTAIQ LYDLQDKLGL SQPSKVIDWL LDATKQDIDN LPPLQMPQGC  120
GQFHQQMFGD NSGSRNLGNL LLPHEPSTSQ LSLSPFFPMS NSTFLSKHGI KINDNVDGDG  180
DTTARVKSSK YWDIDLGLTS KDKEVLQTEP LGDEKGKSIE MNELQKHVGF SGHYAQPSAQ  240
NFFPVVGYSS LPSGLTNNAM PYSYNQWEPS NLSLSHVGGF QHQMENFLHS NSVSSLPSSS  300
SLLANLSSRS QLYFCPQTVA PSLFPTYPPY LAASSTENDS RQINHFQLLS SSSYQPVVPS  360
HHLSNPQMKS FQTNTNTKFL HSQDDTQSQD DEEAD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60970.1	4e-50	TCP family protein