PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM65213.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

SBP

Protein Properties

Length: 500aa MW: 54138.2 Da PI: 6.8204

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM65213.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	134.2	4.1e-42	169	244	2	77
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv gC++dls+ k+yh+rhkvCevhsk+p+v+vsg+eqrfCqqCsrfh l efD++krsCr+rLa+hnerrrk+q OWM65213.1 169 CQVYGCNKDLSSSKDYHKRHKVCEVHSKTPKVIVSGIEQRFCQQCSRFHLLCEFDDGKRSCRKRLAGHNERRRKPQ 244 **************************************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 500 aa Download sequence
MESWASYALP SDSFTRSSKN PFMNWESRGP PSFVTSNSIF TSSQQVNPGQ ALGGSGFVDA 60 PRKQILGDSI PDALHGRMDG GRDANGSVGP SVATADGFLF GEEESSSKLS GCVVDQSPLI 120 DLKLGRLADQ RDSYGSGLSR GAPMLSSSES STPSKRCRAA GVSNQAAYCQ VYGCNKDLSS 180 SKDYHKRHKV CEVHSKTPKV IVSGIEQRFC QQCSRFHLLC EFDDGKRSCR KRLAGHNERR 240 RKPQVGFHSS GRAGRFLLPY DVGKFHGMND CFGHIKLEGR TNYSPIPLSS FQYQDLHQRL 300 PFSSPSFEKG LSPFQESDRD SLTAVNMFGN ITRCSGPRPF LNEDPSIGSE EFGSIFNTEP 360 PIQGLSGISE PGCALSLLSS QSQNSSSHTS GIPMDQSLSQ YSIIQVSDNL AVNGGSSKLP 420 GSVREPQAGP GAVSDGDSAG FEMSDEILNG SGFSKAKDHF LGEEAPTIDL LQLSSQLQRV 480 EHERQYMKLE SDPLVCLRTA

Sequence ? help Back to Top

Protein Sequence Length: 500 aa Download sequence

MESWASYALP SDSFTRSSKN PFMNWESRGP PSFVTSNSIF TSSQQVNPGQ ALGGSGFVDA  60
PRKQILGDSI PDALHGRMDG GRDANGSVGP SVATADGFLF GEEESSSKLS GCVVDQSPLI  120
DLKLGRLADQ RDSYGSGLSR GAPMLSSSES STPSKRCRAA GVSNQAAYCQ VYGCNKDLSS  180
SKDYHKRHKV CEVHSKTPKV IVSGIEQRFC QQCSRFHLLC EFDDGKRSCR KRLAGHNERR  240
RKPQVGFHSS GRAGRFLLPY DVGKFHGMND CFGHIKLEGR TNYSPIPLSS FQYQDLHQRL  300
PFSSPSFEKG LSPFQESDRD SLTAVNMFGN ITRCSGPRPF LNEDPSIGSE EFGSIFNTEP  360
PIQGLSGISE PGCALSLLSS QSQNSSSHTS GIPMDQSLSQ YSIIQVSDNL AVNGGSSKLP  420
GSVREPQAGP GAVSDGDSAG FEMSDEILNG SGFSKAKDHF LGEEAPTIDL LQLSSQLQRV  480
EHERQYMKLE SDPLVCLRTA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	1e-48	SBP family protein