PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM65144.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

CO-like

Protein Properties

Length: 422aa MW: 45546.7 Da PI: 4.8959

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM65144.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	20.5	1e-06	16	59	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + + +++++C ++ +lC C + H+ H++v OWM65144.1 16 ARACESCLKCRARWYCPADDAFLCGACDASVHSAnqlarrHERV 59 578***988*******************657788888876 PP
2	CCT	67.8	3e-23	375	418	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR F+KkirY++RK +Ae+RpR+KGrFvk++ OWM65144.1 375 REARVSRYREKRRTRMFSKKIRYQVRKLNAEKRPRMKGRFVKRT 418 9*****************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence
MIADAKTANA VGGRTARACE SCLKCRARWY CPADDAFLCG ACDASVHSAN QLARRHERVR 60 LEAAPNPSTS HKSNGRSLKT STDDSNSVPA WHGGFTRKAR TPRKKFPGAD GGLAAKLPSP 120 GDLVPELSGE FDVSTGSMDE SDDIGLQCRV PVLDPFAEVG GCDLLGLGGG NGGTCDDELD 180 IGLLLPSEVD LEEFAADVKS LLGKEGLDLD EETGTEVKVK DELSGDDIML ELGDDETAEG 240 CNFEVAAAWE VAAEAAVGEM EFRSPVAAVG GDEVEEEKLV PAAAAGGDNK SSIHSNENEV 300 KPTKMLLRLN YEDVITAWAS HLSPWTNGTR PNLSPGDEWP DCMGSYASDV HNQHNYGGDA 360 MGLRGHSVGG DDKEREARVS RYREKRRTRM FSKKIRYQVR KLNAEKRPRM KGRFVKRTPC 420 FS

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence

MIADAKTANA VGGRTARACE SCLKCRARWY CPADDAFLCG ACDASVHSAN QLARRHERVR  60
LEAAPNPSTS HKSNGRSLKT STDDSNSVPA WHGGFTRKAR TPRKKFPGAD GGLAAKLPSP  120
GDLVPELSGE FDVSTGSMDE SDDIGLQCRV PVLDPFAEVG GCDLLGLGGG NGGTCDDELD  180
IGLLLPSEVD LEEFAADVKS LLGKEGLDLD EETGTEVKVK DELSGDDIML ELGDDETAEG  240
CNFEVAAAWE VAAEAAVGEM EFRSPVAAVG GDEVEEEKLV PAAAAGGDNK SSIHSNENEV  300
KPTKMLLRLN YEDVITAWAS HLSPWTNGTR PNLSPGDEWP DCMGSYASDV HNQHNYGGDA  360
MGLRGHSVGG DDKEREARVS RYREKRRTRM FSKKIRYQVR KLNAEKRPRM KGRFVKRTPC  420
FS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	386	402	RRTRMFSKKIRYQVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	1e-39	CO-like family protein