PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM64952.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family LBD
Protein Properties Length: 257aa    MW: 26281.8 Da    PI: 7.7951
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM64952.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260128.72.5e-40371371100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq+ +l++el++l+
  OWM64952.1  37 PCGACKFLRRKCVPGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLHIPIHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVSLQTELSYLQ 135
                 7***********************9989********************************************************************999 PP

      DUF260  99 ee 100
                 ++
  OWM64952.1 136 AH 137
                 86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    
MSSNASSSGG SSSGAGGSSG AGGSGSGCGG TAGGGGPCGA CKFLRRKCVP GCIFAPYFDS  60
EQGAAHFAAV HKVFGASNVS KLLLHIPIHK RLDAVVTICY EAQARLRDPV YGCVAHIFAL  120
QQQVVSLQTE LSYLQAHLAA LEVPTPPPPP PPPQLLMPPP LSIADLPMAS SVPATYDLST  180
LFDPMVQPSW AMQQQRHIDP RHFVGSGTGV SSAAAVGSSE LQALARELLH RHGSPPQPQG  240
GSLPCPDASS SPSPSSK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.19e-78LBD family protein