PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OWM64792.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
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Family | LBD | ||||||||
Protein Properties | Length: 218aa MW: 23756 Da PI: 5.1402 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 64.6 | 2.5e-20 | 2 | 95 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +C++C+vlr++C+++Cvl++++ p++q++++ +v+k+FG++++l++++a+pe +r+++ r+ +Pv G+vg+++++++ql+q+++e++l OWM64792.1 2 SCNGCRVLRKGCSEQCVLRQCLrgvvgPQAQANATLFVAKFFGRATLLSFVSAVPEPHRPAV---------GRTINPVGGVVGLLWTGNWQLCQSSVETVL 93 6**********************************************************966.........6677*********************99988 PP DUF260 97 lk 98 ++ OWM64792.1 94 QG 95 76 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence |
MSCNGCRVLR KGCSEQCVLR QCLRGVVGPQ AQANATLFVA KFFGRATLLS FVSAVPEPHR 60 PAVGRTINPV GGVVGLLWTG NWQLCQSSVE TVLQGGPLQP LPELASRNPC PDSDNCSESG 120 IDYFRPDLTE SPKVINPPSK SFDDEDELKF QRCDDLDLSL KSTMPMPVEE SEMCPLRSKK 180 RRAETPPEEE SKTTASGSGS SSDGGLERRE RPLLSLFI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 3e-43 | LBD family protein |