PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM64464.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

CO-like

Protein Properties

Length: 393aa MW: 43233.7 Da PI: 6.3144

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM64464.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19.5	2.1e-06	19	60	4	39
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 r C+++ + + +C+ + +lC C +++H H++ OWM64464.1 19 RACDTCRSAACTVYCRADTAYLCTGCDSQIHAAnrvasrHER 60 57****99*******************55567777765 PP
2	zf-B_box	31.6	3.5e-10	61	106	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ ++ + C+ + lC+ C + +H+ H++vp+ OWM64464.1 61 VWVCQACERAPAAFLCKADAASLCAACDSDIHSAnplarrHQRVPI 106 689***************************668999999997 PP
3	CCT	67.4	3.9e-23	324	367	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eK+k RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ OWM64464.1 324 REARVLRYREKKKMRKFEKTIRYASRKAYAETRPRIKGRFAKRT 367 9*****************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence
MLNLKRESGG SSGDNTWARA CDTCRSAACT VYCRADTAYL CTGCDSQIHA ANRVASRHER 60 VWVCQACERA PAAFLCKADA ASLCAACDSD IHSANPLARR HQRVPILPIP PGAHCDPDGS 120 RYGPAGGHGN GLFLGQDGDE TVDEEEEDED EAASWLLLNP VKHNNSSNSN NNSINNTNQN 180 NGFVFGGEAD DYLDLVEYNS CTENQYSSGP YNQQHYGFPR KNYAGDSIVP VQCRESKDPL 240 QHHQNQQQNF HLGLDYEPSK AASSYNGSLC HSVSVSSMDV GIVPESTTSD ISISHSTSTA 300 PKGTIDLFSG PPVQMPTQLS PLDREARVLR YREKKKMRKF EKTIRYASRK AYAETRPRIK 360 GRFAKRTSVE IEVDQMFSTT IMTENGYGIV PSF

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence

MLNLKRESGG SSGDNTWARA CDTCRSAACT VYCRADTAYL CTGCDSQIHA ANRVASRHER  60
VWVCQACERA PAAFLCKADA ASLCAACDSD IHSANPLARR HQRVPILPIP PGAHCDPDGS  120
RYGPAGGHGN GLFLGQDGDE TVDEEEEDED EAASWLLLNP VKHNNSSNSN NNSINNTNQN  180
NGFVFGGEAD DYLDLVEYNS CTENQYSSGP YNQQHYGFPR KNYAGDSIVP VQCRESKDPL  240
QHHQNQQQNF HLGLDYEPSK AASSYNGSLC HSVSVSSMDV GIVPESTTSD ISISHSTSTA  300
PKGTIDLFSG PPVQMPTQLS PLDREARVLR YREKKKMRKF EKTIRYASRK AYAETRPRIK  360
GRFAKRTSVE IEVDQMFSTT IMTENGYGIV PSF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	332	338	REKKKMR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02380.1	1e-113	CO-like family protein