PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM63860.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

TCP

Protein Properties

Length: 490aa MW: 53120.2 Da PI: 8.0289

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM63860.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	115	1e-35	72	229	2	131
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......................ssssasec.eaes 77 g+kdrhsk+ T++g+RdRRvRls+++a++f+d+qd+LG+d++sk++eWL+++a +ai el+++ +++sa+ e++ OWM63860.1 72 SGGKDRHSKVLTSKGLRDRRVRLSVSTAIQFYDIQDRLGYDQPSKAVEWLIKAASEAIAELPSLnnfphtptqlsdekrasegtehGFDSANVEiEDNP 170 689*************************************************************66666666666555555544443333332232222 PP TCP 78 ssssasnsssgkaaksaakskksqksaasalnlak.esr....akarararertrekmr 131 + +++++++++ + +++a+s+ s++s+ s l+l++ e r +k+r+rarer ++++ OWM63860.1 171 DYQNQNQQQQHVSLSKSACSSTSETSKGSGLSLSRsEIRvnrvKKSRERARERAAKDKE 229 22222223333445555566666666666677777444488889999999998777655 PP

Sequence ? help Back to Top
Protein Sequence Length: 490 aa Download sequence
MEVEEIQTQA PPSKFPRIDL DSLKVGQNYP PEEEDDLKLA RMTSTGAAAD NGTSRLRSWH 60 HSSRIIRVSR ASGGKDRHSK VLTSKGLRDR RVRLSVSTAI QFYDIQDRLG YDQPSKAVEW 120 LIKAASEAIA ELPSLNNFPH TPTQLSDEKR ASEGTEHGFD SANVEIEDNP DYQNQNQQQQ 180 HVSLSKSACS STSETSKGSG LSLSRSEIRV NRVKKSRERA RERAAKDKEK DPPPAQAHQG 240 GHGAAAPLAT PISQTSSFTE LLTAGITSNS NSSPSGSAHQ PNPAGRQWAS SSPMDYFSAG 300 QFLSRGQNLP GFLGQIQLPQ ALPVQVPPFS ISGEGNNGNG NSNHHQELQH ISFVNAEHLN 360 LIPVTSSAGG EYNLNFTISP SSVSSSSSSP GLIAGFNRGT LQSNLPHLQR FTSSPHHHVD 420 GSTNNLPFFI GAAAVPSPVE TSHHHHNHQH HQHQQLHIGH FSSGIESRLQ LCYGDGNRQG 480 NDHKGKAAKS

Sequence ? help Back to Top

Protein Sequence Length: 490 aa Download sequence

MEVEEIQTQA PPSKFPRIDL DSLKVGQNYP PEEEDDLKLA RMTSTGAAAD NGTSRLRSWH  60
HSSRIIRVSR ASGGKDRHSK VLTSKGLRDR RVRLSVSTAI QFYDIQDRLG YDQPSKAVEW  120
LIKAASEAIA ELPSLNNFPH TPTQLSDEKR ASEGTEHGFD SANVEIEDNP DYQNQNQQQQ  180
HVSLSKSACS STSETSKGSG LSLSRSEIRV NRVKKSRERA RERAAKDKEK DPPPAQAHQG  240
GHGAAAPLAT PISQTSSFTE LLTAGITSNS NSSPSGSAHQ PNPAGRQWAS SSPMDYFSAG  300
QFLSRGQNLP GFLGQIQLPQ ALPVQVPPFS ISGEGNNGNG NSNHHQELQH ISFVNAEHLN  360
LIPVTSSAGG EYNLNFTISP SSVSSSSSSP GLIAGFNRGT LQSNLPHLQR FTSSPHHHVD  420
GSTNNLPFFI GAAAVPSPVE TSHHHHNHQH HQHQQLHIGH FSSGIESRLQ LCYGDGNRQG  480
NDHKGKAAKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18390.1	9e-44	TCP family protein