PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM63844.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family ARF
Protein Properties Length: 882aa    MW: 97086.5 Da    PI: 6.4777
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM63844.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.18e-24127228199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +l
  OWM63844.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQL 221
                 99*****************************8544444..48************************************************..8899999 PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +++++r+
  OWM63844.1 222 LLGIRRA 228
                 ****997 PP
2Auxin_resp118.17.4e-39253336183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaast+s F+++YnPras+ eFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdldp rWpnS+Wrs+k
  OWM63844.1 253 AAHAASTNSRFTIFYNPRASPCEFVIPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPARWPNSHWRSVK 336
                 79*********************************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 882 aa     Download sequence    
MRLSSACFSP PNQEGEKRVL NSELWHACAG PLVSLPAIGS RVVYFPQGHS EQVAATTNRE  60
VDAHIPNYPS LPPQLICQLH NVTMHADIET DEVYAQMTLQ PLSPQEQKET FLPAELGSLS  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDYSQ QPPAQELIAR DLHDNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR PQTVMPSSVL  240
SSDSMHLGLL AAAAHAASTN SRFTIFYNPR ASPCEFVIPL AKYVKAVYHT RISVGMRFRM  300
LFETEESSVR RYMGTITGIS DLDPARWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT  360
TFPMYPSPFP LRLKRPWPAG LPPFHDDGMG MASQLMWLQG DGGDQRIPSL SFSGLGLHPW  420
AQPRGLDASL LGLQPDMYQA VAAAAALQQD MRPLEPSKHT FMQIPQLQNL PTGSSSLMQQ  480
PQMLPHPQQA FLQQSQLHSV HQSQTQALGH PLLQQQLPRQ HSFNEQQLVD HQQAPSVSSM  540
SQSMPLLCHQ MSFSDSNGNT VTSPVVSPLQ SLLGSFPQDE SSHLLCSLPQ TSPLISSPSS  600
WPSKRAAVER LHPSGDSNNV SPKMQQVGPP AHNNSITQSS ISLPPFPGAR DCSVDQEGST  660
DPQSHLLFGV NLEPSSLLMQ NGLSGLRGVV GSDGESTNLP FTSNYMSNNM GSEFGLNPSI  720
TPASCNDGSG FLQSPENTGQ GNTPSKTFVK VYKSGSFGRS LDITKFSSYN ELRSELAQMF  780
GLEGLLEDPL RSGWQLVFVD RENDVLLLGD GPWPEFVSSV WCIKILSPEE VQEMGKSGIE  840
LLNSATPIQR LPNGTTTCDD FTTRQDSRSL STGIPSVGSL DY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0ARF family protein