PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM63817.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family HD-ZIP
Protein Properties Length: 275aa    MW: 30829.3 Da    PI: 8.405
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM63817.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.72.3e-191876357
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                k  ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  OWM63817.1 18 KYVRYTPEQVEALERVYNECPKPSSLRRQQLIRECpilcNIEPKQIKVWFQNRRCREKQ 76
                6789*****************************************************97 PP
2START52.91.1e-171652672103
                 HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXX CS
       START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvael 98 
                 +aee+++++++ka+ ++  Wv++  +++g++++ +++ s+++sg a+r++g+v  +++  v+e+l+d++ W ++++  +++ vi +g  g+++l +++ 
  OWM63817.1 165 IAEETLAQFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARVCGLVSLEPT-KVAEILKDRPSWFRDCRCLDVVSVIPTGngGTIELVYMQV 262
                 68999*****************************************************.8888888888********************9999999988 PP

                 TTXX- CS
       START  99 qalsp 103
                 + l++
  OWM63817.1 263 VSLTV 267
                 88665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    
MAAALNSKHQ QQQMDNNKYV RYTPEQVEAL ERVYNECPKP SSLRRQQLIR ECPILCNIEP  60
KQIKVWFQNR RCREKQRKES FRLQTVNRKL SAMNKLLMEE NDRLQKQVSH LVYENGYMRQ  120
QLQSSSATTT DNSCESVVMS GQQQQNPAAQ QPPKDASSPA GLLAIAEETL AQFLSKATGT  180
AVDWVQMIGM KPGPDSIGIV AVSRNCSGVA ARVCGLVSLE PTKVAEILKD RPSWFRDCRC  240
LDVVSVIPTG NGGTIELVYM QVVSLTVEAV SDFFC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.11e-147HD-ZIP family protein