PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM63719.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

Trihelix

Protein Properties

Length: 502aa MW: 56768.1 Da PI: 7.4258

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM63719.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	96	3.5e-30	85	170	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+e+r+++++r+r++++k+plW+evs+ m +e+g++r+ k+C+ek+enl k+ykk+keg+ +r ++ +++++f+qlea OWM63719.1 85 RWPRQETLTLLEIRSRLDSRFREANQKGPLWDEVSRIMsEEHGYQRTGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 170 8***********************************999*************************98..55667*****85 PP

Sequence ? help Back to Top
Protein Sequence Length: 502 aa Download sequence
MDGHHQHHPY GMADFRQLMT GVPPPPELFP SHHRGPQPME IMMAAAAGHQ MKVHGRGSAA 60 KLHEFPTDNS PAAAAFEGGD FGSARWPRQE TLTLLEIRSR LDSRFREANQ KGPLWDEVSR 120 IMSEEHGYQR TGKKCREKFE NLYKYYKKTK EGKAGRQDGK HYRFFRQLEA LYGDHTSSNA 180 SMTACSVPEA QGLVNSLGSY HPSIISPQLV NASGNNHETA SHQSQKASDS LSLPGSSDFD 240 TSSSNDDNTT SATDLMVENI SEGRNTRAKK RRGGRSWKVK IKDFIDSRIR KLMEKQEAWV 300 EKMMRALEEK EQERLLREEE WRTQEIARID KEHKFWAKER AWIEARDAAI MEALHNLTSR 360 SSSSDNNMMS IDNHHIPVCM ENGKGTAAHT DRLGDQGMID GFLKRSKEYY DKKHKENISR 420 CGSNNYFHGD NDSLYNQGGV AYCEISEQGP ETARVHHQLN DGTSPSNLNA GNPVQDSCFR 480 FLMGDGGSLW ENYGMKLTKG EN

Sequence ? help Back to Top

Protein Sequence Length: 502 aa Download sequence

MDGHHQHHPY GMADFRQLMT GVPPPPELFP SHHRGPQPME IMMAAAAGHQ MKVHGRGSAA  60
KLHEFPTDNS PAAAAFEGGD FGSARWPRQE TLTLLEIRSR LDSRFREANQ KGPLWDEVSR  120
IMSEEHGYQR TGKKCREKFE NLYKYYKKTK EGKAGRQDGK HYRFFRQLEA LYGDHTSSNA  180
SMTACSVPEA QGLVNSLGSY HPSIISPQLV NASGNNHETA SHQSQKASDS LSLPGSSDFD  240
TSSSNDDNTT SATDLMVENI SEGRNTRAKK RRGGRSWKVK IKDFIDSRIR KLMEKQEAWV  300
EKMMRALEEK EQERLLREEE WRTQEIARID KEHKFWAKER AWIEARDAAI MEALHNLTSR  360
SSSSDNNMMS IDNHHIPVCM ENGKGTAAHT DRLGDQGMID GFLKRSKEYY DKKHKENISR  420
CGSNNYFHGD NDSLYNQGGV AYCEISEQGP ETARVHHQLN DGTSPSNLNA GNPVQDSCFR  480
FLMGDGGSLW ENYGMKLTKG EN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	269	295	KKRRGGRSWKVKIKDFIDSRIRKLMEK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	4e-81	Trihelix family protein