PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM63711.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

bHLH

Protein Properties

Length: 390aa MW: 43242 Da PI: 7.8249

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM63711.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.2	5.1e-12	211	258	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h ++Er+RR+++ ++f L l+P + k+++Ka++L +++Y+k+Lq OWM63711.1 211 QDHIMAERKRREKLSQRFIALSALVPDL-----KRMDKASVLGDTIKYLKQLQ 258 6799**********************.....89***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence
MSNPKSSPPV GLGGKREPLA IFWERDPPSG SFIWKEASSM EISSLRGIPE MGFEDMSFID 60 QWQMNSIDEL SILPLAAAFG GHIQSSFPQP TINFKASMDD SYHRPSKQLK QNSWASCKTE 120 QISTPQAVDS SNIVSFVNSN ITSSNSNFGS QNSGILKPKE EEAVCSNSIE KTSSDVMFSQ 180 GSCGNQNFVF KACQGGKRIS VNDSNRSSQT QDHIMAERKR REKLSQRFIA LSALVPDLKR 240 MDKASVLGDT IKYLKQLQER VNTLEEQTRK KTTESVVFVK KSQLFDDVRS CSPSENSSSD 300 LSLSEALPEI EARVSAQDVL IKIHCEKRKG VVEKIVAEVE KLHLTVTNIS SMTFGSFALD 360 ITIISQMNPD FSLSPKDLVK TLRSALKSFM

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence

MSNPKSSPPV GLGGKREPLA IFWERDPPSG SFIWKEASSM EISSLRGIPE MGFEDMSFID  60
QWQMNSIDEL SILPLAAAFG GHIQSSFPQP TINFKASMDD SYHRPSKQLK QNSWASCKTE  120
QISTPQAVDS SNIVSFVNSN ITSSNSNFGS QNSGILKPKE EEAVCSNSIE KTSSDVMFSQ  180
GSCGNQNFVF KACQGGKRIS VNDSNRSSQT QDHIMAERKR REKLSQRFIA LSALVPDLKR  240
MDKASVLGDT IKYLKQLQER VNTLEEQTRK KTTESVVFVK KSQLFDDVRS CSPSENSSSD  300
LSLSEALPEI EARVSAQDVL IKIHCEKRKG VVEKIVAEVE KLHLTVTNIS SMTFGSFALD  360
ITIISQMNPD FSLSPKDLVK TLRSALKSFM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	217	222	ERKRRE
2	218	223	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	4e-56	bHLH family protein