PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OWM63231.1
Organism
Punica granatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica
Family MYB
Protein Properties Length: 309aa    MW: 34518.8 Da    PI: 8.288
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OWM63231.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.55.3e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l++ + ++G g+W+++++  g+ R++k+c++rw +yl
       OWM63231.1 14 KGLWSPEEDEKLARFIMMHGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                     678*******************************************97 PP
2Myb_DNA-binding476.1e-1567109145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      rg +++eE+ l++++++ lG++ W+ Ia+ ++ gRt++++k+ w+
       OWM63231.1  67 RGTFSEEEENLIIELHASLGNR-WSQIAAQLP-GRTDNEIKNLWN 109
                      899*******************.*********.*********998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    
MGRHSCCHKQ KLRKGLWSPE EDEKLARFIM MHGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGTF SEEEENLIIE LHASLGNRWS QIAAQLPGRT DNEIKNLWNS SIKKKLMQQG  120
IDPNTHKPLL QAMNRDETLR DDGQTPTERS TFTIDTLSLR TNPKPDNPPS LFSKFGFSLD  180
SNPSVWFDAS NFSPPSLKTA SSSSSTSSSS MPSELGLNLK PSFGISTWGI AGDSQAQTQP  240
CDAEEVKWSD YLNLPFLVTS TAQERQPLGA AENILRNVSS DEAKSTTMEA RSDVYCKDTV  300
RLATSFGKF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01680.34e-83MYB family protein