PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OWM62933.1

Organism

Punica granatum

Taxonomic ID

22663

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Lythraceae; Punica

Family

C2H2

Protein Properties

Length: 526aa MW: 57388.1 Da PI: 8.9976

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OWM62933.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.5e-05	88	110	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H OWM62933.1 88 FVCEICNKGFQRDQNLQLHRRGH 110 89*******************88 PP
2	zf-C2H2	11.1	0.0012	164	186	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k + +s+ k H +t+ OWM62933.1 164 WKCERCSKKYAVQSDWKAHSKTC 186 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 526 aa Download sequence
MSNISSGGGG GGEVGSFSSS GNNTPAHNNN KKNSLLLSAS STVSNGSTVN PPPPTSVNKK 60 KRNLPGTPDP NAEVIALSPT TLMATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLKQRS 120 STEVRKRVYV CPEQTCVHHN PARALGDLTG IKKHFSRKHG EKKWKCERCS KKYAVQSDWK 180 AHSKTCGTRE YKCDCGTIFS RRDSFITHRA FCDALTEENS KVNHQGLPPK LTAPNATAQV 240 HPELSSSSLP LHNPNPSSTV PEFLDHSDTK THLPNFQNGG FKLNGNAYPT KASNGVFSIG 300 SLLGSSAASF TNVGNGSNNQ LLGSAHMSAT ALLQKAAQMG ATASLNSPLM QPNYGTKMTS 360 SMSSSMEEIQ QLSGPYNHHI QADQNGQSHV TCRPVDGGYD DRFMQKDDRQ QEISSHFLDV 420 SNGGEEASGL VSNMGMFNRL LFDQNGLLPK NVEHEDDHMG LFIGSGRETM TVDFLGIGGT 480 GSPRNLQEHQ KEILQLKGFH NQQRMVGLSQ LHQQQNAIVE KSMWEA

Sequence ? help Back to Top

Protein Sequence Length: 526 aa Download sequence

MSNISSGGGG GGEVGSFSSS GNNTPAHNNN KKNSLLLSAS STVSNGSTVN PPPPTSVNKK  60
KRNLPGTPDP NAEVIALSPT TLMATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLKQRS  120
STEVRKRVYV CPEQTCVHHN PARALGDLTG IKKHFSRKHG EKKWKCERCS KKYAVQSDWK  180
AHSKTCGTRE YKCDCGTIFS RRDSFITHRA FCDALTEENS KVNHQGLPPK LTAPNATAQV  240
HPELSSSSLP LHNPNPSSTV PEFLDHSDTK THLPNFQNGG FKLNGNAYPT KASNGVFSIG  300
SLLGSSAASF TNVGNGSNNQ LLGSAHMSAT ALLQKAAQMG ATASLNSPLM QPNYGTKMTS  360
SMSSSMEEIQ QLSGPYNHHI QADQNGQSHV TCRPVDGGYD DRFMQKDDRQ QEISSHFLDV  420
SNGGEEASGL VSNMGMFNRL LFDQNGLLPK NVEHEDDHMG LFIGSGRETM TVDFLGIGGT  480
GSPRNLQEHQ KEILQLKGFH NQQRMVGLSQ LHQQQNAIVE KSMWEA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-112	C2H2 family protein