PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g992620.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 171aa MW: 19936.7 Da PI: 8.714 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.9 | 7.3e-18 | 17 | 69 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + ++t+eq++ Le+ F +n+++ e++ LAk+lg++ rqV +W+qN+Ra++k Pd.00g992620.m01 17 KKRLTQEQVNLLERSFTSNNKLEPERKLLLAKQLGIPPRQVAIWYQNKRARWK 69 5679************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 110.3 | 1.3e-35 | 16 | 107 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +k+rl++eqv+lLE+sF++++kLeperK la++Lg+ prqva+W+qn+RAR+kt+ lE dy+a+++++++ +e++rLek+ve+Lr elk+ Pd.00g992620.m01 16 NKKRLTQEQVNLLERSFTSNNKLEPERKLLLAKQLGIPPRQVAIWYQNKRARWKTQSLELDYNAIQAKLKTALAEKRRLEKDVERLRGELKK 107 79**************************************************************************************9987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence |
MEFFHTPNHK HSFQHNKKRL TQEQVNLLER SFTSNNKLEP ERKLLLAKQL GIPPRQVAIW 60 YQNKRARWKT QSLELDYNAI QAKLKTALAE KRRLEKDVER LRGELKKAHD LVLVLNQTQE 120 LPAHPVICSM FNSSSAEEGV GSSSLQQHED QVSDHEVKQL EELYACLIDM Q |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53980.1 | 5e-34 | HD-ZIP family protein |