PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g989540.m02
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 226aa    MW: 25533.4 Da    PI: 4.8944
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g989540.m02genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.51.5e-221659851
                      HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       rqvtfskRr gi KKA ELSvLC+ evav+ifs tgkl++yss
  Pd.00g989540.m02 16 ARQVTFSKRRRGISKKAAELSVLCESEVAVVIFSATGKLFDYSS 59
                      69****************************************96 PP
2K-box35.15.5e-13861651494
             K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                        +  +++  kL ke+e+  r++R+++GedL++L+l eL +Le+ +e  l ++ ++K+el+++ i  l kk  el e+n+++
  Pd.00g989540.m02  86 LQLENENRIKLSKELEKN-RQLRQMKGEDLQELDLDELLKLEHLVEATLVRVMETKEELIMSDIVALEKKGTELVEANNQM 165
                       233333334555555553.677********************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    
MMRENIKIKK IDYLPARQVT FSKRRRGISK KAAELSVLCE SEVAVVIFSA TGKLFDYSSS  60
SIKDVIEWYK MRTNGVEKSD EESLELQLEN ENRIKLSKEL EKNRQLRQMK GEDLQELDLD  120
ELLKLEHLVE ATLVRVMETK EELIMSDIVA LEKKGTELVE ANNQMVMLRE RMVMLSKRNT  180
GPALVEPSES ATSTSCNSAL SLSLEDDCSD DVILSLKPGL TGSRGS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24540.12e-39MIKC_MADS family protein