PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g978420.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 154aa    MW: 17727.5 Da    PI: 6.8669
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g978420.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601253.6e-39151141100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +CaaC++lrr+C ++C lapyfp e+ +kfa vhk+FGasnv+k+++ ++e++reda+++lvyeA+ar+rdPvyG++g i++lq+ +e+l+++
  Pd.00g978420.m01  15 PCAACRMLRRRCDRNCSLAPYFPGEEIEKFAGVHKVFGASNVIKMIQMVEETRREDAVKALVYEARARLRDPVYGSTGAIFHLQKMIEELRSQ 107
                       7******************************************************************************************** PP

            DUF260  94 lallkee 100
                       l++++++
  Pd.00g978420.m01 108 LESIRSQ 114
                       *999876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    
MDTQVVPMHS RVHQPCAACR MLRRRCDRNC SLAPYFPGEE IEKFAGVHKV FGASNVIKMI  60
QMVEETRRED AVKALVYEAR ARLRDPVYGS TGAIFHLQKM IEELRSQLES IRSQVLELQQ  120
QRDQLLGILM NNVHCLEDDL FSTMHHDPMF GGDL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.16e-45LBD family protein