PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pd.00g973300.m02 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 576aa MW: 63381.4 Da PI: 8.3523 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 55.8 | 8.4e-18 | 272 | 321 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lrel+P++ ++K +Ka+ L +++eYI+ Lq Pd.00g973300.m02 272 RSKHSATEQRRRSKINDRFQMLRELIPHS----DQKRDKASFLLEVIEYIQFLQ 321 889*************************9....9*******************9 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 576 aa Download sequence |
MELPQPRPFG TEGRKPTHDF LSLYSHPTAQ QDPRPPSQGG YLETHDFLQP LERMGKKCIA 60 KEETSVEIST AEKPASHAAA SAAAQPTSSV EHILPGGIGT YTISHISYFN QRVPKPEGSP 120 VFTVTQAQAS STDRNVEEHS NCTSYTGSGF TLWEESALKN KGKTGKENLG ERPVGIVRGQ 180 WTSSERPAQS SSNNYRNCFS AQSSGQKNIS FMEMMKSAAK GSTQEDEIDD EEEFVLKKET 240 STTTTTATTP YKGDLRVKVD VKSSDQKANT PRSKHSATEQ RRRSKINDRF QMLRELIPHS 300 DQKRDKASFL LEVIEYIQFL QEKVNKYEGS YQGWNPDPEK LMPWRNNPKL RESYCDQSRG 360 MNGGSGTALV FAAKFDEKTT SVSPSIPGSC AQNPVESDTS TETTFKAMDH HPGITSKPMP 420 FPLSMQPNFF TPVRSGGAAV PQLPPRLPSD AENTSQHQSM LCHTVSRATD GAAARDKLKE 480 QELTIEDGRI NISSAYSQGL LNTLTQALQN SGVDLSQASI SVQIELGKRA NSRSPIPKSV 540 VKDNEILSSN QGKRHSRVAS GEDSEHAPKK LKTGRN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G08130.2 | 1e-133 | bHLH family protein |