PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g972240.m02

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

Trihelix

Protein Properties

Length: 528aa MW: 57051.9 Da PI: 6.872

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g972240.m02	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	58.9	1.3e-18	149	235	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++ + +L++a++++ ++l+rg+l++ +Weev++ + r ++s qCk+k +nl+kryk ++++++++ s s++p+f+++e Pd.00g972240.m02 149 EWSDSAISCLLDAYTDKFTQLNRGNLRGRDWEEVAAIVseRCDRQRKSVDQCKNKVDNLKKRYKLERQRMNNG-GVSASHWPWFKKME 235 5***********************************544456677******************9998.566679*****8 PP

Sequence ? help Back to Top
Protein Sequence Length: 528 aa Download sequence
MASCDDDFSI LGDESNTTHH SHLPHAPASH QLHQPYAPPH RFATRTTPVH APPAQPILSD 60 KVNAGEDQAE AGDDYDDASA AAFCSNPFES GTDQNDVVAG ASEKRKDHSD ELSDGGGGGG 120 GSGSAPYSYK RSKPSSAAAI GEYRKDREEW SDSAISCLLD AYTDKFTQLN RGNLRGRDWE 180 EVAAIVSERC DRQRKSVDQC KNKVDNLKKR YKLERQRMNN GGVSASHWPW FKKMENIVGN 240 SLPGKAVSDE DKVVSSPGTT PRQSKRNAMA IISPVSQMNK VKSAPSIKWR RVVFKISGAA 300 LAGAAPNNVD SKLAMLIARE VALACHNGVE VAIVVGGRNF FCGDAWVTAT GLDRSTAYQI 360 GMMATVMNSV LLQSALEKMG VQTRVQTAFS MQEVAEPYSR QRAIRHLEKG RVVIFAGIGA 420 GTGNPLFSTD TAAALRALEI HAEAVLKGTN VDGVYDCNSQ DNNFTFEHIS FRDVVTRGAT 480 SMDSMALTFC EENRIPVVVF NLLEPGNISK ALCGEQVGTL IDQAGRIS

Sequence ? help Back to Top

Protein Sequence Length: 528 aa Download sequence

MASCDDDFSI LGDESNTTHH SHLPHAPASH QLHQPYAPPH RFATRTTPVH APPAQPILSD  60
KVNAGEDQAE AGDDYDDASA AAFCSNPFES GTDQNDVVAG ASEKRKDHSD ELSDGGGGGG  120
GSGSAPYSYK RSKPSSAAAI GEYRKDREEW SDSAISCLLD AYTDKFTQLN RGNLRGRDWE  180
EVAAIVSERC DRQRKSVDQC KNKVDNLKKR YKLERQRMNN GGVSASHWPW FKKMENIVGN  240
SLPGKAVSDE DKVVSSPGTT PRQSKRNAMA IISPVSQMNK VKSAPSIKWR RVVFKISGAA  300
LAGAAPNNVD SKLAMLIARE VALACHNGVE VAIVVGGRNF FCGDAWVTAT GLDRSTAYQI  360
GMMATVMNSV LLQSALEKMG VQTRVQTAFS MQEVAEPYSR QRAIRHLEKG RVVIFAGIGA  420
GTGNPLFSTD TAAALRALEI HAEAVLKGTN VDGVYDCNSQ DNNFTFEHIS FRDVVTRGAT  480
SMDSMALTFC EENRIPVVVF NLLEPGNISK ALCGEQVGTL IDQAGRIS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10030.1	0.0	Trihelix family protein