PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g969090.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | LBD | ||||||||
Protein Properties | Length: 256aa MW: 28653 Da PI: 5.7391 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 71.6 | 1.6e-22 | 2 | 72 | 30 | 100 |
DUF260 30 fanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 f+n+h+l+G+sn++k+ k++++e++++am+s++ye+++ra+ Pv G++g+i++l+ ql+q+ +el +++++ Pd.00g969090.m01 2 FQNAHRLYGVSNIMKIRKQVHPEQQNEAMRSIIYESNMRAKFPVTGCMGIINQLNFQLQQAIEELRYVRTH 72 9****************************************************************999876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence |
MFQNAHRLYG VSNIMKIRKQ VHPEQQNEAM RSIIYESNMR AKFPVTGCMG IINQLNFQLQ 60 QAIEELRYVR THLAICKDQC QYRIPPSPPH YSSCPSSQLQ LGMPSNNDAS AALTIYQHQY 120 QYASAGGGAA GMSFLANEYL ANGLSAVYID DNDVVKPLRV QHPYYSDHNV DQLMAVQSNL 180 VSSQAFPIHQ EMDVPHDYDD IPFDTIADDR QSYIESKEAC ESSAESSFKG TTQSIEHVSQ 240 NDLKSAAACF SLTSVK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 7e-17 | LBD family protein |