PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g954320.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 302aa MW: 32029.1 Da PI: 9.6537

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g954320.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.8	1.8e-08	105	130	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ + Ck+Gd+C+FaHg+ Pd.00g954320.m01 105 KTRLCNKYNTVEGCKFGDKCHFAHGE 130 8*******99**********96 PP
2	zf-CCCH	36.2	1e-11	269	294	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC ++ + GtC +GdrC+FaHgp Pd.00g954320.m01 269 FKTKLCENYTK-GTCTFGDRCHFAHGP 294 69*******.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence
MDFGGGRKRG RPEAASFNGN GGFKKSKPEM ESFTTGIGSK SKPCTKFFST SGCPFGEGCH 60 FLHYVPGGIK AVSQMTGSNP TLPPPPRNSA APPSFPDGSS PPSVKTRLCN KYNTVEGCKF 120 GDKCHFAHGE WELGRPTAQS YEDPRGGGGY PGRMGGGRME PPQQTHGAAA RFGATATAKI 180 SVDASLAGAI IGKNGVNSKQ ICRVTGAKLS IREHESDPKL RNIELEGTFD QIKDASAMVR 240 ELIVNVSSAA GPHMRNNPGM AASAPASNFK TKLCENYTKG TCTFGDRCHF AHGPEELRRQ 300 GM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06770.1	2e-52	C3H family protein