PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g934820.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

CO-like

Protein Properties

Length: 469aa MW: 52073.9 Da PI: 4.6904

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g934820.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	26.3	1.6e-08	6	51	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 +r C+ + k++++fC ++ +lC+ C + H+ H++v+l Pd.00g934820.m01 6 ARACDSCLIKRARWFCAADDAFLCQRCDGSVHSAnqlasrHERVKL 51 678*****************************66889999998875 PP
2	CCT	68	2.5e-23	400	443	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++ Pd.00g934820.m01 400 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 443 9*****************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence
MGGNTARACD SCLIKRARWF CAADDAFLCQ RCDGSVHSAN QLASRHERVK LQAASSKPNQ 60 STLLAADQSP PAWHKGFTRK ARTPRHNNKP PFMAKDDKEK VSLNPPLPFV PEIGCEEANY 120 MDDDEENEDL EQLLYRVPIY DPFAAELCNM SSHEVGNSTS AIDLDDEVTE MGRGNHHEVG 180 DDEEENNNNN SGGNELDNLP GFLPSDMELA EFAADVENLI GGGLDDEDSG DIKGVLGLLD 240 DSKLEGDGGV DVCMKNVDIN EDRKAVKVEE EAEGMEFNPS MLDWNSDYEL RLSSSPLPMG 300 GEEEKVVFLM AAQSSDEVAL MDNKQMMMKR KICLRLDYEA IITAWANQGS PWTTGTRPEL 360 NPDDGWLDCM GMWGSDQIHQ PHGHGESAGC VGGRGDDRGR EARVSRYREK RRTRLFSKKI 420 RYEVRKLNAE KRPRMKGRFV KRTSGSNFVG SSSSNSKTAA GAFPYLIHQ

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence

MGGNTARACD SCLIKRARWF CAADDAFLCQ RCDGSVHSAN QLASRHERVK LQAASSKPNQ  60
STLLAADQSP PAWHKGFTRK ARTPRHNNKP PFMAKDDKEK VSLNPPLPFV PEIGCEEANY  120
MDDDEENEDL EQLLYRVPIY DPFAAELCNM SSHEVGNSTS AIDLDDEVTE MGRGNHHEVG  180
DDEEENNNNN SGGNELDNLP GFLPSDMELA EFAADVENLI GGGLDDEDSG DIKGVLGLLD  240
DSKLEGDGGV DVCMKNVDIN EDRKAVKVEE EAEGMEFNPS MLDWNSDYEL RLSSSPLPMG  300
GEEEKVVFLM AAQSSDEVAL MDNKQMMMKR KICLRLDYEA IITAWANQGS PWTTGTRPEL  360
NPDDGWLDCM GMWGSDQIHQ PHGHGESAGC VGGRGDDRGR EARVSRYREK RRTRLFSKKI  420
RYEVRKLNAE KRPRMKGRFV KRTSGSNFVG SSSSNSKTAA GAFPYLIHQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	411	427	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68520.1	3e-75	CO-like family protein