PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g934420.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family TCP
Protein Properties Length: 257aa    MW: 29139.7 Da    PI: 6.7009
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g934420.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP103.53.5e-3255136373
               TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssssa..sec 73 
                        k+drhski T++g+RdRR+Rls+e+a++fF Lqd L fdk+skt+eWLl qa p+ik+l+g+         s+s+a  ++c
  Pd.00g934420.m01  55 CKRDRHSKINTARGLRDRRMRLSLEVARKFFWLQDALHFDKASKTVEWLLIQATPEIKKLVGDckhmmsstkSTSPAtsESC 136
                       69*************************************************************8777665442222221222 PP
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    
MREAVAANNT LADDHRQTTT TSTTLNIKMV DWDSNKNHGE MMNMDQPQIP RRRSCKRDRH  60
SKINTARGLR DRRMRLSLEV ARKFFWLQDA LHFDKASKTV EWLLIQATPE IKKLVGDCKH  120
MMSSTKSTSP ATSESCEVIS GIDEAATNTN IHINIDGGND GDDKLIQSCE IQPSAKERKG  180
LVHHEIEEPM SSCQVGDHPD LVVDHGTTHD PLVIMGKWSP PSIFSSLQQN IGISQEHHQF  240
ADFQFFGKPW EVYNNYS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.26e-24TCP family protein