PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pd.00g932110.m01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 185aa MW: 20445.5 Da PI: 10.4023 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 60.2 | 2.5e-19 | 24 | 68 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 k+i+n+s qvtfskRr+g++ KA+ LS LC+aeva+++fs++g+ Pd.00g932110.m01 24 KKIQNTSSLQVTFSKRRTGLFRKASQLSALCGAEVAILVFSPHGR 68 689***************************************996 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence |
MSDDSSSTVT QQKRTMGRKK IDIKKIQNTS SLQVTFSKRR TGLFRKASQL SALCGAEVAI 60 LVFSPHGRPF VFGHPSVDSV ISRLASTSAE CMHTSESLRL RLRVGGGGSM GLVKEETQEV 120 AEAWSGGCGF WWDQPTEKMK LHELKQFKTS LEDLKAKVGM QLDDMARRKL AARDFLGVYR 180 NGSCG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-34 | M-type_MADS family protein |